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Sequence DB iconSequence DB (CASA)

This new database for protein science was began to construct under the goal of

  1. collecting many kinds of protein related informations as many as possible from public databases all around the world,
  2. integrating these data, each of which is collected under the different purposes, into one unified database,
  3. as a result, constructing the next generation bioinformatic infrastructure for protein research field in Japan.

From three major public databases of amino acids, which are DDBJ DAD in Japan, NCBI NR in USA and UniRef in Europe, we already gathered over 13 million data of amino acids, over 31 million of species and over 74 million of cross-reference IDs (updated on 22th February, 2010).

On Demand Analysis iconOnDemand Analysis (FUJI)

To any user-specified protein the Functionally Annotated Japanese Protein Structural Information (FUJI) database expeditiously identifies various relevant data including structural information and displays them.

Experimental MS iconPREIMS

PREIMS is a database of various experimental protocols, which have been developed during the Target Proteins Research Project (TPRP). Researchers engaged in the TPRP submit their experimental protocols, which are viewed on this PREIMS portal with their accession priority.

The experimental protocols are described by ontology, constructed by the ontology editor, "Hozo", as well as by a normal flat text.

eSOL iconeSOL

eSOL(Solubility database of all E.coli proteins) is a database on the solubility of entire ensemble E.coli proteins (Niwa T, Ying BW, Saito K, Jin W, Takada S, Ueda T and Taguchi H, 2009) individually synthesized by PURE system that is chaperon free.

autophagy db iconAutophagy DB

The goal of the Autophagy Database is to provide up-to-date relevant information including protein structure data to researchers of autophagy, and to disseminate important findings to a wider audience so that their ramifications can be appreciated. For this purpose, we strive to make the database to contain as much pertinent information as possible and to make the contents freely available in a user-friendly format.