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Targeted Proteins Research Program

Publication List (Beta) (Last Update: 2010/03/05)

Statistics
Year	# of pubs.	# of IF>=4
2007	146	38
2008	303	54
2009	253	63
2010	1
total	703	155

Fundamental Biology

FBA1: Structural and functional studies of bacterial type III and type IV protein export systems

FBA2: Structural basis for dynamic formation and mechanistic actions of huge and complicated proteolytic machinery

FBA3: Structural basis of autophagy related proteins

FBA4: Structural biology of transcription factors and histone modification factors

FBA5: Structure and function of voltage-sensor domain proteins

FBA6: Structure-function analysis of protein complexes that regulate vesicular traffic

FBA7: Structural studies of the cell-cell junctional proteins

FBB1: Structural Basis of Sensor System for Cytoprotective Gene Expression Responding to Carcinogens and Oxidative Stress

FBB2: Solid-state NMR investigation on functional and irregular structures of H+-ATPsynthase Fo

FBB3: 3D structural and functional analyses for elucidation of the mechanism of mitochondrial respiration.

FBB4: Towards structure-based design of novel inhibitors for V-ATPase

FBB5: Elucidation of the mechanism of high-order cellular functions achieved by non-coding RNAs

Medicine/Pharmacology

MPA1: Structural analysis of molecules related to the innate immune system

MPA2: Drug discovery-oriented analysis for structure and function of DOCK2 signaling molecules

MPA3: Study on reactive oxygen-producing systems involved in neural cell death and structure-based discovery of their inhibitors

MPA4: Structural analysis of γ-secretase complex for the development of the treatment for Alzheimer's disease

MPA5: Development of anti-trypanosome drugs targeting nucleic acids and red-ox regulatory pathway

MPA6: Structure-based functional analyses and development of drug intervention in metabolic syndrome and diabetes- AdipoR/AMPK/ACC as key targets

MPB1: Structural and Functional Analysis of a Molecular Target FROUNT for Drug Discovery

MPB2: Development of new compounds for fibrosis therapy

MPB3: Structure and drug development of NPP family members involved in cancer and various diseases

MPB4: Structural and functional analysis of semaphorins and their receptors

Food/Environment

FEA1: Structural and functional analyses of signaling proteins for insect control

FEA2: Structure-based functional analysis of key enzymes that can be applied to production of antibiotics and other useful compounds

FEA3: Structural and functional analyses of transcriptional regulatory proteins useful for breading of drought and heat stress tolerant crops

FEA4: Structural and functional analyses of regulatory proteins in plant growth and stress resistance, that is useful for improvement of the stress-resistant crop

FEA5: Structural biology on efflux transport machineries to understand multi-drug resistance

FEB1: Structural and functional analyses of the rodent ESP family

FEB2: Structural and functional analysis of taste receptors applicable to development of new taste substances and taste evaluation systems

FEB3: Structural and functional analysis of taste receptors applicable to development of new taste substances and taste evaluation systems

FEB4: Structural biology of bacterial super-biosystem for import and degradation of polysaccharides and its application to food and environmental areas

FEB5: Structure-function analyses and improvement of useful enzymes for chiral compound production

FEB6: Structure and function of environmentally-responsive proteins

Protein Production

PPC1: Development of Advanced Production Technologies for Target Proteins

PPD1: Development of novel affinity tag system for the high-quality production of extracellular and membrane proteins

PPD2: Development of innovative methods to support membrane protein crystallization

PPD3: Antibody production for Membrane Protein Crystallization

Structural Analysis

SAC1: Development of the synchrotron beamlines dedicated to the measurement of micron-size protein crystals

SAD1: Structural Analysis of Membrane Protein Complexes by Solid-State NMR

SAD2: Diversification of protein structural analysis technologies by the SAIL method

Chemical Regulation

CRC1: Establishment of Chemical Library and Development of Protein Regulation Technology

Information Platform

IPC1: Creation and management of information platform in Targeted Proteins Research Program

IPD1: Structural Bioinformatics for Modeling Protein Complex Structures

Unclassified

_: _

Fundamental Biology

FBA1: 10articles(top)

Minamino, Tohru and Yoshimura, Shinsuke D. and Morimoto, Yusuke V. and González-Pedrajo, Bertha and Kami-Ike, Nobunori and Namba, Keiichi

Roles of the extreme N-terminal region of FliH for efficient localization of the FliH-FliI complex to the bacterial flagellar type III export apparatus.

Molecular microbiology, Nov, 2009 (LINK)

Kazetani, Ken-Ichi and Minamino, Tohru and Miyata, Tomoko and Kato, Takayuki and Namba, Keiichi

ATP-induced FliI hexamerization facilitates bacterial flagellar protein export.

Biochemical and biophysical research communications, Oct, 2009 (LINK)

Minamino, Tohru and Imada, Katsumi and Namba, Keiichi

Mechanisms of type III protein export for bacterial flagellar assembly.

Molecular bioSystems, Nov, 2008 (LINK)

Minamino, Tohru and Shimada, Masafumi and Okabe, Mayuko and Saijo-Hamano, Yumiko and Imada, Katsumi and Kihara, May and Namba, Keiichi

Role of the C-terminal cytoplasmic domain of FlhA in bacterial flagellar type III protein export.

Journal of bacteriology, Jan, 2010 (LINK)

Kinoshita, Miki and Yamane, Midori and Matsunami, Hideyuki and Minamino, Tohru and Namba, Keiichi and Imada, Katsumi

Purification, crystallization and preliminary X-ray analysis of FliT, a bacterial flagellar substrate-specific export chaperone.

Acta crystallographica. Section F, Structural biology and crystallization communications, Aug, 2009 (LINK)

Kojima, Seiji and Imada, Katsumi and Sakuma, Mayuko and Sudo, Yuki and Kojima, Chojiro and Minamino, Tohru and Homma, Michio and Namba, Keiichi

Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB.

Molecular microbiology, Aug, 2009 (LINK)

Okabe, Mayuko and Minamino, Tohru and Imada, Katsumi and Namba, Keiichi and Kihara, May

Role of the N-terminal domain of FliI ATPase in bacterial flagellar protein export.

FEBS letters, Feb, 2009 (LINK)

Ibuki, Tatsuya and Shimada, Masafumi and Minamino, Tohru and Namba, Keiichi and Imada, Katsumi

Crystallization and preliminary X-ray analysis of FliJ, a cytoplasmic component of the flagellar type III protein-export apparatus from Salmonella sp.

Acta crystallographica. Section F, Structural biology and crystallization communications, Jan, 2009 (LINK)

Kubori, Tomoko and Hyakutake, Akihiro and Nagai, Hiroki

Legionella translocates an E3 ubiquitin ligase that has multiple U-boxes with distinct functions.

Molecular microbiology, Mar, 2008 (LINK)

Minamino, Tohru and Namba, Keiichi

Distinct roles of the FliI ATPase and proton motive force in bacterial flagellar protein export.

Nature, Jan, 2008 (LINK)

FBA2: 13articles(top)

Nishio, Kazuya and Kim, Sang-Woo W. and Kawai, Kentaro and Mizushima, Tsunehiro and Yamane, Takashi and Hamazaki, Jun and Murata, Shigeo and Tanaka, Keiji and Morimoto, Yukio

Crystal structure of the deubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain.

Biochemical and biophysical research communications, Oct, 2009 (LINK)

Tanaka, Keiji

The proteasome: overview of structure and functions.

Proceedings of the Japan Academy. Series B, Physical and biological sciences, 2009 (LINK)

Komatsu, Masaaki and Kurokawa, Hirofumi and Waguri, Satoshi and Taguchi, Keiko and Kobayashi, Akira and Ichimura, Yoshinobu and Sou, Yu-Shin and Ueno, Izumi and Sakamoto, Ayako and Tong, Kit I. and Kim, Mihee and Nishito, Yasumasa and Iemura, Shun-ichiro and Natsume, Tohru and Ueno, Takashi and Kominami, Eiki and Motohashi, Hozumi and Tanaka, Keiji and Yamamoto, Masayuki

The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1

Nature Cell Biology, Feb, 2010 (LINK)

Sakata, Eri and Satoh, Tadashi and Yamamoto, Shunsuke and Yamaguchi, Yoshiki and Yagi-Utsumi, Maho and Kurimoto, Eiji and Tanaka, Keiji and Wakatsuki, Soichi and Kato, Koichi

Crystal Structure of UbcH5b approximately Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2 approximately Ub Conjugates.

Structure (London, England : 1993), Jan, 2010 (LINK)

Kaneko, Takeumi and Hamazaki, Jun and Iemura, Shun-Ichiro and Sasaki, Katsuhiro and Furuyama, Kaori and Natsume, Tohru and Tanaka, Keiji and Murata, Shigeo

Assembly pathway of the Mammalian proteasome base subcomplex is mediated by multiple specific chaperones.

Cell, May, 2009 (LINK)

Saeki, Yasushi and Toh-E, Akio and Kudo, Tai and Kawamura, Hitomi and Tanaka, Keiji

Multiple proteasome-interacting proteins assist the assembly of the yeast 19S regulatory particle.

Cell, May, 2009 (LINK)

Kimura, Yoko and Yashiroda, Hideki and Kudo, Tai and Koitabashi, Sumiko and Murata, Shigeo and Kakizuka, Akira and Tanaka, Keiji

An inhibitor of a deubiquitinating enzyme regulates ubiquitin homeostasis.

Cell, May, 2009 (LINK)

Sugiyama, Masaaki and Hamada, Kei and Kato, Koichi and Kurimoto, Eiji and Okamoto, Kenta and Morimoto, Yukio and Ikeda, Susumu and Naito, Sachio and Furusaka, Michihiko and Itoh, Keiji

SANS simulation of aggregated protein in aqueous solution

Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Feb, 2009 (LINK)

Saeki, Yasushi and Kudo, Tai and Sone, Takayuki and Kikuchi, Yoshiko and Yokosawa, Hideyoshi and Toh-e, Akio and Tanaka, Keiji

Lysine 63-linked polyubiquitin chain may serve as a targeting signal for the 26S proteasome.

The EMBO journal, Feb, 2009 (LINK)

Murata, Shigeo and Yashiroda, Hideki and Tanaka, Keiji

Molecular mechanisms of proteasome assembly.

Nature reviews. Molecular cell biology, Feb, 2009 (LINK)

Hirano, Yuko and Kaneko, Takeumi and Okamoto, Kenta and Bai, Minghui and Yashiroda, Hideki and Furuyama, Kaori and Kato, Koichi and Tanaka, Keiji and Murata, Shigeo

Dissecting beta-ring assembly pathway of the mammalian 20S proteasome.

The EMBO journal, Aug, 2008 (LINK)

Ichimura, Yoshinobu and Kumanomidou, Taichi and Sou, Yu-shin S. and Mizushima, Tsunehiro and Ezaki, Junji and Ueno, Takashi and Kominami, Eiki and Yamane, Takashi and Tanaka, Keiji and Komatsu, Masaaki

Structural basis for sorting mechanism of p62 in selective autophagy.

The Journal of biological chemistry, Aug, 2008 (LINK)

Yashiroda, Hideki and Mizushima, Tsunehiro and Okamoto, Kenta and Kameyama, Tomie and Hayashi, Hidemi and Kishimoto, Toshihiko and Niwa, Shin-ichiro and Kasahara, Masanori and Kurimoto, Eiji and Sakata, Eri and Takagi, Kenji and Suzuki, Atsuo and Hirano, Yuko and Murata, Shigeo and Kato, Koichi and Yamane, Takashi and Tanaka, Keiji

Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes.

Nature structural & molecular biology, Mar, 2008 (LINK)

FBA3: 25articles(top)

Kamada, Yoshiaki and Yoshino, Ken-Ichi I. and Kondo, Chika and Kawamata, Tomoko and Oshiro, Noriko and Yonezawa, Kazuyoshi and Ohsumi, Yoshinori

Tor directly controls the Atg1 kinase complex to regulate autophagy.

Molecular and cellular biology, Dec, 2009 (LINK)

Fujioka, Yuko and Noda, Nobuo N. and Nakatogawa, Hitoshi and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

The dimeric coiled-coil structure of Saccharomyces cerevisiae ATG16 and its functional significance in autophagy.

The Journal of biological chemistry, Nov, 2009 (LINK)

Saio, Tomohide and Yokochi, Masashi and Inagaki, Fuyuhiko

The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway.

Journal of biomolecular NMR, Nov, 2009 (LINK)

Noda, Nobuo N. and Kumeta, Hiroyuki and Nakatogawa, Hitoshi and Satoo, Kenji and Adachi, Wakana and Ishii, Junko and Fujioka, Yuko and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

Structural basis of target recognition by Atg8/LC3 during selective autophagy.

Genes to cells : devoted to molecular & cellular mechanisms, Dec, 2008 (LINK)

Fujioka, Yuko and Noda, Nobuo N. and Matsushita, Minako and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

Crystallization of the coiled-coil domain of Atg16 essential for autophagy.

Acta crystallographica. Section F, Structural biology and crystallization communications, Nov, 2008 (LINK)

Hanada, Takao and Noda, Nobuo N. and Satomi, Yoshinori and Ichimura, Yoshinobu and Fujioka, Yuko and Takao, Toshifumi and Inagaki, Fuyuhiko and Ohsumi, Yoshinori

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.

The Journal of biological chemistry, Dec, 2007 (LINK)

Suzuki, Kuninori and Ohsumi, Yoshinori

Current knowledge of the pre-autophagosomal structure (PAS).

FEBS letters, Feb, 2010 (LINK)

Noda, Nobuo N. and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

Atg8-family interacting motif crucial for selective autophagy.

FEBS letters, Jan, 2010 (LINK)

Kabeya, Yukiko and Noda, Nobuo N. and Fujioka, Yuko and Suzuki, Kuninori and Inagaki, Fuyuhiko and Ohsumi, Yoshinori

Characterization of the Atg17-Atg29-Atg31 complex specifically required for starvation-induced autophagy in Saccharomyces cerevisiae.

Biochemical and biophysical research communications, Sep, 2009 (LINK)

Nakatogawa, Hitoshi and Suzuki, Kuninori and Kamada, Yoshiaki and Ohsumi, Yoshinori

Dynamics and diversity in autophagy mechanisms: lessons from yeast.

Nature reviews. Molecular cell biology, Jul, 2009 (LINK)

Okamoto, Koji and Kondo-Okamoto, Noriko and Ohsumi, Yoshinori

Mitochondria-Anchored Receptor Atg32 Mediates Degradation of Mitochondria via Selective Autophagy

Developmental Cell, Jul, 2009 (LINK)

Satoo, Kenji and Noda, Nobuo N. and Kumeta, Hiroyuki and Fujioka, Yuko and Mizushima, Noboru and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.

The EMBO journal, May, 2009 (LINK)

Sekito, Takayuki and Kawamata, Tomoko and Ichikawa, Rie and Suzuki, Kuninori and Ohsumi, Yoshinori

Atg17 recruits Atg9 to organize the pre-autophagosomal structure.

Genes to cells : devoted to molecular & cellular mechanisms, Apr, 2009 (LINK)

Noda, Nobuo N. and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

ATG systems from the protein structural point of view.

Chemical reviews, Apr, 2009 (LINK)

Hanada, Takao and Satomi, Yoshinori and Takao, Toshifumi and Ohsumi, Yoshinori

The amino-terminal region of Atg3 is essential for association with phosphatidylethanolamine in Atg8 lipidation.

FEBS letters, Apr, 2009 (LINK)

Kobashigawa, Yoshihiro and Kumeta, Hiroyuki and Ogura, Kenji and Inagaki, Fuyuhiko

Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method.

Journal of biomolecular NMR, Mar, 2009 (LINK)

Obara, Keisuke and Sekito, Takayuki and Niimi, Kaori and Ohsumi, Yoshinori

The Atg18-Atg2 complex is recruited to autophagic membranes via phosphatidylinositol 3-phosphate and exerts an essential function.

The Journal of biological chemistry, Aug, 2008 (LINK)

Oh-oka, Kyoko and Nakatogawa, Hitoshi and Ohsumi, Yoshinori

Physiological pH and acidic phospholipids contribute to substrate specificity in lipidation of Atg8.

The Journal of biological chemistry, Aug, 2008 (LINK)

Obara, Keisuke and Noda, Takeshi and Niimi, Kaori and Ohsumi, Yoshinori

Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae.

Genes to cells : devoted to molecular & cellular mechanisms, Jun, 2008 (LINK)

Noda, Nobuo N. and Fujioka, Yuko and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

Crystallization of the Atg12-Atg5 conjugate bound to Atg16 by the free-interface diffusion method.

Journal of synchrotron radiation, May, 2008 (LINK)

Kawamata, Tomoko and Kamada, Yoshiaki and Kabeya, Yukiko and Sekito, Takayuki and Ohsumi, Yoshinori

Organization of the pre-autophagosomal structure responsible for autophagosome formation.

Molecular biology of the cell, May, 2008 (LINK)

Inagaki, Fuyuhiko

[Intracellular signal transduction]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Apr, 2008 (LINK)

Kobashigawa, Yoshihiro and Tanaka, Shinya and Inagaki, Fuyuhiko

[Structural basis for the transforming activity of human cancer-related signaling adaptor protein Crk]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Feb, 2008 (LINK)

Fujioka, Yuko and Noda, Nobuo N. and Fujii, Kiyonaga and Yoshimoto, Kohki and Ohsumi, Yoshinori and Inagaki, Fuyuhiko

In vitro reconstitution of plant Atg8 and Atg12 conjugation systems essential for autophagy.

The Journal of biological chemistry, Jan, 2008 (LINK)

Nakatogawa, Hitoshi and Ichimura, Yoshinobu and Ohsumi, Yoshinori

Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion.

Cell, Jul, 2007 (LINK)

FBA4: 24articles(top)

Hishiki, Asami and Shimizu, Toshiyuki and Hanafusa, Tomo and Ohmori, Haruo and Sato, Mamoru and Hashimoto, Hiroshi

Initial crystallographic study of human PCNA in complex with a peptide containing the noncanonical PIP-box sequence of human DNA polymerase iota.

Acta crystallographica. Section F, Structural biology and crystallization communications, Oct, 2008 (LINK)

Imasaki, Tsuyoshi and Shimizu, Toshiyuki and Hashimoto, Hiroshi and Hidaka, Yuji and Kose, Shingo and Imamoto, Naoko and Yamada, Michiyuki and Sato, Mamoru

Structural basis for substrate recognition and dissociation by human transportin 1.

Molecular cell, Oct, 2007 (LINK)

西島和三 and 西村善文

対談・NMRがリードする創薬と技術開発の新たなサイクル

バイオテクノロジージャーナル, 2007 (LINK)

Nishimura, Yoshifumi

Seimei kagaku no tameno kiki bunseki jikken handobukku : bunko bunseki kenbi kaiseki jiki kyomei bunseki shitsuryo bunseki imejingu kaiseki nado no arayuru bunseki kiki no purotokoru o kanzen mora., 2007 (LINK)

Hishiki, Asami and Hashimoto, Hiroshi and Hanafusa, Tomo and Kamei, Keijiro and Ohashi, Eiji and Shimizu, Toshiyuki and Ohmori, Haruo and Sato, Mamoru

Structural basis for novel interactions between human translesion synthesis polymerases and proliferating cell nuclear antigen.

The Journal of biological chemistry, Apr, 2009 (LINK)

Tanaka, Aki and Watanabe, Tomomichi and Iida, Yukari and Hanaoka, Fumio and Ohkuma, Yoshiaki

Central forkhead domain of human TFIIE beta plays a primary role in binding double-stranded DNA at transcription initiation.

Genes to cells : devoted to molecular & cellular mechanisms, Mar, 2009 (LINK)

Watanabe, Masahiro and Heddle, Jonathan G. and Kikuchi, Kenichi and Unzai, Satoru and Akashi, Satoko and Park, Sam-Yong Y. and Tame, Jeremy R.

The nature of the TRAP-Anti-TRAP complex.

Proceedings of the National Academy of Sciences of the United States of America, Feb, 2009 (LINK)

Hishiki, Asami and Shimizu, Toshiyuki and Serizawa, Aya and Ohmori, Haruo and Sato, Mamoru and Hashimoto, Hiroshi

Crystallographic study of G178S mutant of human proliferating cell nuclear antigen.

Acta crystallographica. Section F, Structural biology and crystallization communications, Sep, 2008 (LINK)

Oda, Takashi and Hashimoto, Hiroshi and Kuwabara, Naoyuki and Hayashi, Kokoro and Kojima, Chojiro and Kawasaki, Tsutomu and Shimamoto, Ko and Sato, Mamoru and Shimizu, Toshiyuki

Crystallographic characterization of the N-terminal domain of a plant NADPH oxidase.

Acta crystallographica. Section F, Structural biology and crystallization communications, Sep, 2008 (LINK)

Tsutsui, Taiki and Umemura, Hiroyasu and Tanaka, Aki and Mizuki, Fumitaka and Hirose, Yutaka and Ohkuma, Yoshiaki

Human mediator kinase subunit CDK11 plays a negative role in viral activator VP16-dependent transcriptional regulation.

Genes to cells : devoted to molecular & cellular mechanisms, Aug, 2008 (LINK)

Shimizu, Toshiyuki and Sato, Mamoru

[Structural basis for nuclear transport mechanism]

Seikagaku. The Journal of Japanese Biochemical Society, Jun, 2008 (LINK)

Okuda, Masahiko and Nishimura, Yoshifumi

[Structural biology of a general transcription factor, TFIIE and its interaction mode with TFIIH]

Seikagaku. The Journal of Japanese Biochemical Society, Jun, 2008 (LINK)

Yamane, Tsutomu and Okamura, Hideyasu and Ikeguchi, Mitsunori and Nishimura, Yoshifumi and Kidera, Akinori

Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.

Proteins, Jun, 2008 (LINK)

Hirose, Yutaka and Iwamoto, Yu and Sakuraba, Kazumi and Yunokuchi, Izumi and Harada, Fumio and Ohkuma, Yoshiaki

Human phosphorylated CTD-interacting protein, PCIF1, negatively modulates gene expression by RNA polymerase II.

Biochemical and biophysical research communications, May, 2008 (LINK)

Shi, Xiangguo and Takamizawa, Atsushi and Nishimura, Yoshifumi and Hiraoka, Kenzo and Akashi, Satoko

Thermal unfolding of proteins probed by laser spray mass spectrometry.

Rapid communications in mass spectrometry : RCM, May, 2008 (LINK)

Shimojo, Hideaki and Sano, Norihiko and Moriwaki, Yoshihito and Okuda, Masahiko and Horikoshi, Masami and Nishimura, Yoshifumi

Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain.

Journal of molecular biology, May, 2008 (LINK)

Murayama, Akiko and Ohmori, Kazuji and Fujimura, Akiko and Minami, Hiroshi and Yasuzawa-Tanaka, Kayoko and Kuroda, Takao and Oie, Shohei and Daitoku, Hiroaki and Okuwaki, Mitsuru and Nagata, Kyosuke and Fukamizu, Akiyoshi and Kimura, Keiji and Shimizu, Toshiyuki and Yanagisawa, Junn

Epigenetic control of rDNA loci in response to intracellular energy status.

Cell, May, 2008 (LINK)

Nishimura, Yoshifumi

[Protein 3000 project "Transcription and translation"]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Apr, 2008 (LINK)

Okuda, Masahiko and Tanaka, Aki and Satoh, Manami and Mizuta, Shoko and Takazawa, Manabu and Ohkuma, Yoshiaki and Nishimura, Yoshifumi

Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH.

The EMBO journal, Apr, 2008 (LINK)

Akashi, Satoko and Nagakura, Shinjiro and Yamamoto, Seiji and Okuda, Masahiko and Ohkuma, Yoshiaki and Nishimura, Yoshifumi

Structural characterization of human general transcription factor TFIIF in solution.

Protein science : a publication of the Protein Society, Mar, 2008 (LINK)

Sperry, Justin B. and Shi, Xiangguo and Rempel, Don L. and Nishimura, Yoshifumi and Akashi, Satoko and Gross, Michael L.

A mass spectrometric approach to the study of DNA-binding proteins: interaction of human TRF2 with telomeric DNA.

Biochemistry, Feb, 2008 (LINK)

Hirose, Yutaka and Harada, Fumio

Mouse nucleolin binds to 4.5S RNAh, a small noncoding RNA.

Biochemical and biophysical research communications, Jan, 2008 (LINK)

Nishimura, Yoshifumi

[Protein dynamics and naturally unfolded state]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Aug, 2007 (LINK)

Nishimura, Yoshifumi and Nakamura, Haruki

[New paradigm on dynamic protein structure: Introduction]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Aug, 2007 (LINK)

FBA5: 8articles(top)

Sakata, Souhei and Kurokawa, Tatsuki and N{\o}rholm, Morten H. and Takagi, Masahiro and Okochi, Yoshifumi and von Heijne, Gunnar and Okamura, Yasushi

Functionality of the voltage-gated proton channel truncated in S4.

Proceedings of the National Academy of Sciences of the United States of America, Dec, 2009 (LINK)

Okochi, Yoshifumi and Sasaki, Mari and Iwasaki, Hirohide and Okamura, Yasushi

Voltage-gated proton channel is expressed on phagosomes.

Biochemical and biophysical research communications, May, 2009 (LINK)

Okamura, Yasushi and Murata, Yoshimichi and Iwasaki, Hirohide

Voltage-sensing phosphatase: actions and potentials.

The Journal of physiology, Feb, 2009 (LINK)

Tsutsui, Hidekazu and Karasawa, Satoshi and Okamura, Yasushi and Miyawaki, Atsushi

Improving membrane voltage measurements using FRET with new fluorescent proteins.

Nature methods, Aug, 2008 (LINK)

Koch, Hans P. and Kurokawa, Tatsuki and Okochi, Yoshifumi and Sasaki, Mari and Okamura, Yasushi and Larsson, H. Peter

Multimeric nature of voltage-gated proton channels.

Proceedings of the National Academy of Sciences of the United States of America, Jul, 2008 (LINK)

Iwasaki, Hirohide and Murata, Yoshimichi and Kim, Youngjun and Hossain, Md Israil I. and Worby, Carolyn A. and Dixon, Jack E. and McCormack, Thomas and Sasaki, Takehiko and Okamura, Yasushi

A voltage-sensing phosphatase, Ci-VSP, which shares sequence identity with PTEN, dephosphorylates phosphatidylinositol 4,5-bisphosphate.

Proceedings of the National Academy of Sciences of the United States of America, Jun, 2008 (LINK)

Hossain, Md Israil I. and Iwasaki, Hirohide and Okochi, Yoshifumi and Chahine, Mohamed and Higashijima, Shinichi and Nagayama, Kuniaki and Okamura, Yasushi

Enzyme domain affects the movement of the voltage sensor in ascidian and zebrafish voltage-sensing phosphatases.

The Journal of biological chemistry, Jun, 2008 (LINK)

Musset, B. and Cherny, V. V. and Morgan, D. and Okamura, Y. and Ramsey, I. S. and Clapham, D. E. and DeCoursey, T. E.

Detailed comparison of expressed and native voltage-gated proton channel currents.

The Journal of physiology, May, 2008 (LINK)

FBA6: 33articles(top)

Kudo, Norio and Kumagai, Keigo and Matsubara, Ryosuke and Kobayashi, Shu and Hanada, Kentaro and Wakatsuki, Soichi and Kato, Ryuichi

Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.

Journal of molecular biology, Dec, 2009 (LINK)

Dikic, Ivan and Wakatsuki, Soichi and Walters, Kylie J.

Ubiquitin-binding domains - from structures to functions.

Nature reviews. Molecular cell biology, Oct, 2009 (LINK)

Glick, Benjamin S. and Nakano, Akihiko

Membrane traffic within the Golgi apparatus.

Annual review of cell and developmental biology, 2009 (LINK)

Inoue, Michio and Kamikubo, Hironari and Kataoka, Mikio and Kato, Ryuichi and Yoshimori, Tamotsu and Wakatsuki, Soichi and Kawasaki, Masato

Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B.

Traffic (Copenhagen, Denmark), Dec, 2008 (LINK)

Suzuki, Hironori and Kawasaki, Masato and Kakiuchi, Takeshi and Shibata, Hideki and Wakatsuki, Soichi and Maki, Masatoshi

Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2.

Acta crystallographica. Section F, Structural biology and crystallization communications, Nov, 2008 (LINK)

Ebine, Kazuo and Okatani, Yusuke and Uemura, Tomohiro and Goh, Tatsuaki and Shoda, Keiko and Niihama, Mitsuru and Morita, Miyo Terao T. and Spitzer, Christoph and Otegui, Marisa S. and Nakano, Akihiko and Ueda, Takashi

A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.

The Plant cell, Nov, 2008 (LINK)

Suzuki, Hironori and Kawasaki, Masato and Inuzuka, Tatsutoshi and Okumura, Mayumi and Kakiuchi, Takeshi and Shibata, Hideki and Wakatsuki, Soichi and Maki, Masatoshi

Structural basis for Ca2+ -dependent formation of ALG-2/Alix peptide complex: Ca2+/EF3-driven arginine switch mechanism.

Structure (London, England : 1993), Oct, 2008 (LINK)

Chavas, Leonard M. and Ihara, Kentaro and Kawasaki, Masato and Torii, Seiji and Uejima, Tamami and Kato, Ryuichi and Izumi, Tetsuro and Wakatsuki, Soichi

Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a.

Structure (London, England : 1993), Oct, 2008 (LINK)

Yanagida-Ishizaki, Yuko and Takei, Tomomi and Ishizaki, Ray and Imakagura, Hitoshi and Takahashi, Senye and Shin, Hye-Won W. and Katoh, Yohei and Nakayama, Kazuhisa

Recruitment of Tom1L1/Srcasm to endosomes and the midbody by Tsg101.

Cell structure and function, 2008 (LINK)

Abbal, Philippe and Pradal, Martine and Muniz, Lisa and Sauvage, François-Xavier X. and Chatelet, Philippe and Ueda, Takashi and Tesniere, Catherine

Molecular characterization and expression analysis of the Rab GTPase family in Vitis vinifera reveal the specific expression of a VvRabA protein.

Journal of experimental botany, 2008 (LINK)

Suwastika, I. Nengah and Uemura, Tomohiro and Shiina, Takashi and H Sato, Masa and Takeyasu, Kunio

SYP71, a plant-specific Qc-SNARE protein, reveals dual localization to the plasma membrane and the endoplasmic reticulum in Arabidopsis.

Cell structure and function, 2008 (LINK)

Goh, Tatsuaki and Uchida, Wakana and Arakawa, Satoko and Ito, Emi and Dainobu, Tomoko and Ebine, Kazuo and Takeuchi, Masaki and Sato, Ken and Ueda, Takashi and Nakano, Akihiko

VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.

The Plant cell, Nov, 2007 (LINK)

Yamane, Junko and Kubo, Akiharu and Nakayama, Kazuhisa and Yuba-Kubo, Akiko and Katsuno, Tatsuya and Tsukita, Shoichiro and Tsukita, Sachiko

Functional involvement of TMF/ARA160 in Rab6-dependent retrograde membrane traffic.

Experimental cell research, Oct, 2007 (LINK)

Tabata, Kazuhito V. and Sato, Ken and Ide, Toru and Nishizaka, Takayuki and Nakano, Akihiko and Noji, Hiroyuki

Visualization of cargo concentration by COPII minimal machinery in a planar lipid membrane

The EMBO Journal, Sep, 2009 (LINK)

Era, Atsuko and Tominaga, Motoki and Ebine, Kazuo and Awai, Chie and Saito, Chieko and Ishizaki, Kimitsune and Yamato, Katsuyuki T. and Kohchi, Takayuki and Nakano, Akihiko and Ueda, Takashi

Application of Lifeact reveals F-actin dynamics in Arabidopsis thaliana and the liverwort, Marchantia polymorpha.

Plant & cell physiology, Jun, 2009 (LINK)

Fujimoto, Masaru and Arimura, Shin-ichi and Mano, Shoji and Kondo, Maki and Saito, Chieko and Ueda, Takashi and Nakazono, Mikio and Nakano, Akihiko and Nishimura, Mikio and Tsutsumi, Nobuhiro

Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission.

The Plant journal : for cell and molecular biology, May, 2009 (LINK)

Saitoh, Akina and Shin, Hye-Won W. and Yamada, Akane and Waguri, Satoshi and Nakayama, Kazuhisa

Three homologous ArfGAPs participate in coat protein I-mediated transport.

The Journal of biological chemistry, May, 2009 (LINK)

Takano, Hirotsugu and Nakazawa, Shunsuke and Shirata, Naritoshi and Tamba, Shigero and Furuta, Kazuyuki and Tsuchiya, Sohken and Morimoto, Kazushi and Itano, Naoki and Irie, Atsushi and Ichikawa, Atsushi and Kimata, Koji and Nakayama, Kazuhisa and Sugimoto, Yukihiko and Tanaka, Satoshi

Involvement of CD44 in mast cell proliferation during terminal differentiation.

Laboratory investigation; a journal of technical methods and pathology, Apr, 2009 (LINK)

Nishimoto-Morita, Kirika and Shin, Hye-Won W. and Mitsuhashi, Hiroko and Kitamura, Masashi and Zhang, Qian and Johannes, Ludger and Nakayama, Kazuhisa

Differential effects of depletion of ARL1 and ARFRP1 on membrane trafficking between the trans-Golgi network and endosomes.

The Journal of biological chemistry, Apr, 2009 (LINK)

Rahighi, Simin and Ikeda, Fumiyo and Kawasaki, Masato and Akutsu, Masato and Suzuki, Nobuhiro and Kato, Ryuichi and Kensche, Tobias and Uejima, Tamami and Bloor, Stuart and Komander, David and Randow, Felix and Wakatsuki, Soichi and Dikic, Ivan

Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation.

Cell, Mar, 2009 (LINK)

Azuma, Yuya and Takada, Mie and Shin, Hye-Won W. and Kioka, Noriyuki and Nakayama, Kazuhisa and Ueda, Kazumitsu

Retroendocytosis pathway of ABCA1/apoA-I contributes to HDL formation.

Genes to cells : devoted to molecular & cellular mechanisms, Feb, 2009 (LINK)

Enami, Kazuhiko and Ichikawa, Mie and Uemura, Tomohiro and Kutsuna, Natsumaro and Hasezawa, Seiichiro and Nakagawa, Tsuyoshi and Nakano, Akihiko and Sato, Masa H.

Differential expression control and polarized distribution of plasma membrane-resident SYP1 SNAREs in Arabidopsis thaliana.

Plant & cell physiology, Feb, 2009 (LINK)

Murakami-Sekimata, Akiko and Sato, Ken and Sato, Ken and Takashima, Akihiko and Nakano, Akihiko

O-Mannosylation is required for the solubilization of heterologously expressed human beta-amyloid precursor protein in Saccharomyces cerevisiae.

Genes to cells : devoted to molecular & cellular mechanisms, Feb, 2009 (LINK)

Suzuki, Hironori and Kawasaki, Masato and Inuzuka, Tatsutoshi and Okumura, Mayumi and Kakiuchi, Takeshi and Shibata, Hideki and Wakatsuki, Soichi and Maki, Masatoshi

The mechanism of Ca2+-dependent recognition of Alix by ALG-2: insights from X-ray crystal structures.

Biochemical Society transactions, Feb, 2009 (LINK)

Chavas, Leonard M. and Ihara, Kentaro and Kawasaki, Masato and Kato, Ryuichi and Izumi, Tetsuro and Wakatsuki, Soichi

Purification, crystallization and preliminary X-ray crystallographic analysis of Rab27a GTPase in complex with exophilin4/Slp2-a effector.

Acta crystallographica. Section F, Structural biology and crystallization communications, Jul, 2008 (LINK)

Ishizaki, Ray and Shin, Hye-Won W. and Mitsuhashi, Hiroko and Nakayama, Kazuhisa

Redundant roles of BIG2 and BIG1, guanine-nucleotide exchange factors for ADP-ribosylation factors in membrane traffic between the trans-Golgi network and endosomes.

Molecular biology of the cell, Jun, 2008 (LINK)

Ishikawa, Takaaki and Machida, Chiyoko and Yoshioka, Yasushi and Ueda, Takashi and Nakano, Akihiko and Machida, Yasunori

EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana.

Genes to cells : devoted to molecular & cellular mechanisms, Jun, 2008 (LINK)

Takeda, Yuichi and Nakano, Akihiko

In vitro formation of a novel type of membrane vesicles containing Dpm1p: putative transport vesicles for lipid droplets in budding yeast.

Journal of biochemistry, Jun, 2008 (LINK)

Takano, Hirotsugu and Nakazawa, Shunsuke and Okuno, Yasushi and Shirata, Naritoshi and Tsuchiya, Sohken and Kainoh, Takayuki and Takamatsu, Seigoh and Furuta, Kazuyuki and Taketomi, Yoshitaka and Naito, Yuko and Takematsu, Hiromu and Kozutsumi, Yasunori and Tsujimoto, Gozoh and Murakami, Makoto and Kudo, Ichiro and Ichikawa, Atsushi and Nakayama, Kazuhisa and Sugimoto, Yukihiko and Tanaka, Satoshi

Establishment of the culture model system that reflects the process of terminal differentiation of connective tissue-type mast cells.

FEBS letters, Apr, 2008 (LINK)

Dhonukshe, Pankaj and Grigoriev, Ilya and Fischer, Rainer and Tominaga, Motoki and Robinson, David G. and Hasek, Jir\'{\i} and Paciorek, Tomasz and Petrásek, Jan and Seifertová, Daniela and Tejos, Ricardo and Meisel, Lee A. and Zaz\'{\i}malová, Eva and Gadella, Theodorus W. and Stierhof, York-Dieter D. and Ueda, Takashi and Oiwa, Kazuhiro and Akhmanova, Anna and Brock, Roland and Spang, Anne and Friml, Jir\'{\i}

Auxin transport inhibitors impair vesicle motility and actin cytoskeleton dynamics in diverse eukaryotes.

Proceedings of the National Academy of Sciences of the United States of America, Mar, 2008 (LINK)

Higashio, Hironori and Sato, Ken and Nakano, Akihiko

Smy2p participates in COPII vesicle formation through the interaction with Sec23p/Sec24p subcomplex.

Traffic (Copenhagen, Denmark), Jan, 2008 (LINK)

Tamura, Tomoko and Asakura, Tomiko and Uemura, Tomohiro and Ueda, Takashi and Terauchi, Kaede and Misaka, Takumi and Abe, Keiko

Signal peptide peptidase and its homologs in Arabidopsis thaliana--plant tissue-specific expression and distinct subcellular localization.

The FEBS journal, Jan, 2008 (LINK)

Satoh, Tadashi and Cowieson, Nathan P. and Hakamata, Wataru and Ideo, Hiroko and Fukushima, Keiko and Kurihara, Masaaki and Kato, Ryuichi and Yamashita, Katsuko and Wakatsuki, Soichi

Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36.

The Journal of biological chemistry, Sep, 2007 (LINK)

FBA7: 22articles(top)

Miyata, Muneaki and Ogita, Hisakazu and Komura, Hitomi and Nakata, Shinsuke and Okamoto, Ryoko and Ozaki, Misa and Majima, Takashi and Matsuzawa, Naomi and Kawano, Satoshi and Minami, Akihiro and Waseda, Masumi and Fujita, Naoyuki and Mizutani, Kiyohito and Rikitake, Yoshiyuki and Takai, Yoshimi

Localization of nectin-free afadin at the leading edge and its involvement in directional cell movement induced by platelet-derived growth factor.

Journal of cell science, Dec, 2009 (LINK)

Meng, Wenxiang and Mushika, Yoshimi and Ichii, Tetsuo and Takeichi, Masatoshi

Anchorage of microtubule minus ends to adherens junctions regulates epithelial cell-cell contacts.

Cell, Nov, 2008 (LINK)

Sakisaka, Toshiaki and Yamamoto, Yasunori and Mochida, Sumiko and Nakamura, Michiko and Nishikawa, Kouki and Ishizaki, Hiroyoshi and Okamoto-Tanaka, Miki and Miyoshi, Jun and Fujiyoshi, Yoshinori and Manabe, Toshiya and Takai, Yoshimi

Dual inhibition of SNARE complex formation by tomosyn ensures controlled neurotransmitter release.

The Journal of cell biology, Oct, 2008 (LINK)

Takai, Yoshimi and Ikeda, Wataru and Ogita, Hisakazu and Rikitake, Yoshiyuki

The Immunoglobulin-Like Cell Adhesion Molecule Nectin and Its Associated Protein Afadin

Annual Review of Cell and Developmental Biology, 2008 (LINK)

Nakata, Shinsuke and Fujita, Naoyuki and Kitagawa, Yuichi and Okamoto, Ryoko and Ogita, Hisakazu and Takai, Yoshimi

Regulation of platelet-derived growth factor receptor activation by afadin through SHP-2: implications for cellular morphology.

The Journal of biological chemistry, Dec, 2007 (LINK)

Moriwaki, Kazumasa and Tsukita, Shoichiro and Furuse, Mikio

Tight junctions containing claudin 4 and 6 are essential for blastocyst formation in preimplantation mouse embryos.

Developmental biology, Dec, 2007 (LINK)

Miyata, Muneaki and Rikitake, Yoshiyuki and Takahashi, Motonori and Nagamatsu, Yuichi and Yamauchi, Yusuke and Ogita, Hisakazu and Hirata, Ken-ichi and Takai, Yoshimi

Regulation by afadin of cyclical activation and inactivation of Rap1, Rac1, and RhoA small G proteins at leading edges of moving NIH3T3 cells.

The Journal of biological chemistry, Sep, 2009 (LINK)

Majima, Takashi and Ogita, Hisakazu and Yamada, Tomohiro and Amano, Hisayuki and Togashi, Hideru and Sakisaka, Toshiaki and Tanaka-Okamoto, Miki and Ishizaki, Hiroyoshi and Miyoshi, Jun and Takai, Yoshimi

Involvement of afadin in the formation and remodeling of synapses in the hippocampus.

Biochemical and biophysical research communications, Aug, 2009 (LINK)

Ishiuchi, Takashi and Misaki, Kazuyo and Yonemura, Shigenobu and Takeichi, Masatoshi and Tanoue, Takuji

Mammalian Fat and Dachsous cadherins regulate apical membrane organization in the embryonic cerebral cortex.

The Journal of cell biology, Jun, 2009 (LINK)

Yamamoto, Yasunori and Mochida, Sumiko and Kurooka, Takao and Sakisaka, Toshiaki

Reciprocal intramolecular interactions of tomosyn control its inhibitory activity on SNARE complex formation.

The Journal of biological chemistry, May, 2009 (LINK)

Takahashi, Senye and Iwamoto, Noriko and Sasaki, Hiroyuki and Ohashi, Masato and Oda, Yukako and Tsukita, Shoichiro and Furuse, Mikio

The E3 ubiquitin ligase LNX1p80 promotes the removal of claudins from tight junctions in MDCK cells.

Journal of cell science, Apr, 2009 (LINK)

Togashi, Hideru and Sakisaka, Toshiaki and Takai, Yoshimi

Cell adhesion molecules in the central nervous system.

Cell adhesion & migration, Jan, 2009 (LINK)

Kuramitsu, Kaori and Ikeda, Wataru and Inoue, Naoya and Tamaru, Yoshiyuki and Takai, Yoshimi

Novel role of nectin: implication in the co-localization of JAM-A and claudin-1 at the same cell-cell adhesion membrane domain.

Genes to cells : devoted to molecular & cellular mechanisms, Aug, 2008 (LINK)

Takai, Yoshimi and Miyoshi, Jun and Ikeda, Wataru and Ogita, Hisakazu

Nectins and nectin-like molecules: roles in contact inhibition of cell movement and proliferation.

Nature reviews. Molecular cell biology, Aug, 2008 (LINK)

Kanzaki, Noriyuki and Ogita, Hisakazu and Komura, Hitomi and Ozaki, Misa and Sakamoto, Yasuhisa and Majima, Takashi and Ijuin, Takeshi and Takenawa, Tadaomi and Takai, Yoshimi

Involvement of the nectin-afadin complex in PDGF-induced cell survival.

Journal of cell science, Jun, 2008 (LINK)

Takahashi, Motonori and Rikitake, Yoshiyuki and Nagamatsu, Yuichi and Hara, Tetsuya and Ikeda, Wataru and Hirata, Ken-ichi and Takai, Yoshimi

Sequential activation of Rap1 and Rac1 small G proteins by PDGF locally at leading edges of NIH3T3 cells.

Genes to cells : devoted to molecular & cellular mechanisms, Jun, 2008 (LINK)

Nagamatsu, Yuichi and Rikitake, Yoshiyuki and Takahashi, Motonori and Deki, Yuko and Ikeda, Wataru and Hirata, Ken-ichi and Takai, Yoshimi

Roles of Necl-5/poliovirus receptor and Rho-associated kinase (ROCK) in the regulation of transformation of integrin alpha(V)beta(3)-based focal complexes into focal adhesions.

The Journal of biological chemistry, May, 2008 (LINK)

Amano, Hisayuki and Ikeda, Wataru and Kawano, Satoshi and Kajita, Mihoko and Tamaru, Yoshiyuki and Inoue, Naoya and Minami, Yukiko and Yamada, Akio and Takai, Yoshimi

Interaction and localization of Necl-5 and PDGF receptor beta at the leading edges of moving NIH3T3 cells: Implications for directional cell movement.

Genes to cells : devoted to molecular & cellular mechanisms, Mar, 2008 (LINK)

Matsuda, Miho and Kobayashi, Yuka and Masuda, Sayuri and Adachi, Makoto and Watanabe, Tsuyoshi and Yamashita, Jun K. and Nishi, Eiichiro and Tsukita, Shoichiro and Furuse, Mikio

Identification of adherens junction-associated GTPase activating proteins by the fluorescence localization-based expression cloning.

Experimental cell research, Mar, 2008 (LINK)

Abe, Kentaro and Takeichi, Masatoshi

EPLIN mediates linkage of the cadherin catenin complex to F-actin and stabilizes the circumferential actin belt.

Proceedings of the National Academy of Sciences of the United States of America, Jan, 2008 (LINK)

Komura, Hitomi and Ogita, Hisakazu and Ikeda, Wataru and Mizoguchi, Akira and Miyoshi, Jun and Takai, Yoshimi

Establishment of cell polarity by afadin during the formation of embryoid bodies.

Genes to cells : devoted to molecular & cellular mechanisms, Jan, 2008 (LINK)

Sakamoto, Yasuhisa and Ogita, Hisakazu and Komura, Hitomi and Takai, Yoshimi

Involvement of nectin in inactivation of integrin alpha(v)beta(3) after the establishment of cell-cell adhesion.

The Journal of biological chemistry, Jan, 2008 (LINK)

FBB1: 37articles(top)

Li, Jinqing and Ichikawa, Tomonaga and Villacorta, Luis and Janicki, Joseph S. and Brower, Gregory L. and Yamamoto, Masayuki and Cui, Taixing

Nrf2 protects against maladaptive cardiac responses to hemodynamic stress.

Arteriosclerosis, thrombosis, and vascular biology, Nov, 2009 (LINK)

Okada, Kosuke and Shoda, Junichi and Taguchi, Keiko and Maher, Jonathan M. and Ishizaki, Kaoru and Inoue, Yoshimi and Ohtsuki, Makio and Goto, Nobuharu and Sugimoto, Hirokazu and Utsunomiya, Hirotoshi and Oda, Koji and Warabi, Eiji and Ishii, Tetsuro and Yamamoto, Masayuki

Nrf2 counteracts cholestatic liver injury via stimulation of hepatic defense systems.

Biochemical and biophysical research communications, Nov, 2009 (LINK)

Kosaka, Kunio and Mimura, Junsei and Itoh, Ken and Satoh, Takumi and Shimojo, Yosuke and Kitajima, Chieko and Maruyama, Atsushi and Yamamoto, Masayuki and Shirasawa, Takuji

Role of Nrf2 and p62/ZIP in the Neurite Outgrowth by Carnosic Acid in PC12h Cells.

J Biochem, Nov, 2009 (LINK)

Kobayashi, Eri and Shimizu, Ritsuko and Kikuchi, Yuko and Takahashi, Satoru and Yamamoto, Masayuki

Loss of the Gata1 gene IE exon leads to variant transcript expression and the production of a GATA1 protein lacking the N-terminal domain.

The Journal of biological chemistry, Oct, 2009 (LINK)

Ohtsuji, Makiko and Katsuoka, Fumiki and Kobayashi, Akira and Aburatani, Hiroyuki and Hayes, John D. and Yamamoto, Masayuki

Nrf1 and Nrf2 play distinct roles in activation of antioxidant response element-dependent genes.

The Journal of biological chemistry, Nov, 2008 (LINK)

Yoh, Keigyou and Hirayama, Aki and Ishizaki, Kazusa and Yamada, Akiko and Takeuchi, Masayoshi and Yamagishi, Sho-ichi and Morito, Naoki and Nakano, Takako and Ojima, Masami and Shimohata, Homare and Itoh, Ken and Takahashi, Satoru and Yamamoto, Masayuki

Hyperglycemia induces oxidative and nitrosative stress and increases renal functional impairment in Nrf2-deficient mice.

Genes to cells : devoted to molecular & cellular mechanisms, Nov, 2008 (LINK)

Shibata, Tatsuhiro and Kokubu, Akiko and Gotoh, Masahiro and Ojima, Hidenori and Ohta, Tsutomu and Yamamoto, Masayuki and Hirohashi, Setsuo

Genetic alteration of Keap1 confers constitutive Nrf2 activation and resistance to chemotherapy in gallbladder cancer.

Gastroenterology, Oct, 2008 (LINK)

Jałoszyński, Paweł and Murata, Soichiro and Shinkai, Yasuhiro and Takahashi, Satoru and Kumagai, Yoshito and Nishimura, Susumu and Yamamoto, Masayuki

Dysfunction of Nrf2 decreases KBrO3-induced oxidative DNA damage in Ogg1-null mice.

Biochemical and biophysical research communications, Dec, 2007 (LINK)

Komatsu, Masaaki and Waguri, Satoshi and Koike, Masato and Sou, Yu-Shin S. and Ueno, Takashi and Hara, Taichi and Mizushima, Noboru and Iwata, Jun-Ichi and Ezaki, Junji and Murata, Shigeo and Hamazaki, Jun and Nishito, Yasumasa and Iemura, Shun-Ichiro and Natsume, Tohru and Yanagawa, Toru and Uwayama, Junya and Warabi, Eiji and Yoshida, Hiroshi and Ishii, Tetsuro and Kobayashi, Akira and Yamamoto, Masayuki and Yue, Zhenyu and Uchiyama, Yasuo and Kominami, Eiki and Tanaka, Keiji

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.

Cell, Dec, 2007 (LINK)

Sawa, Tomohiro and Zaki, Mohammad Hasan H. and Okamoto, Tatsuya and Akuta, Teruo and Tokutomi, Yoshiko and Kim-Mitsuyama, Shokei and Ihara, Hideshi and Kobayashi, Akira and Yamamoto, Masayuki and Fujii, Shigemoto and Arimoto, Hirokazu and Akaike, Takaaki

Protein S-guanylation by the biological signal 8-nitroguanosine 3',5'-cyclic monophosphate.

Nature chemical biology, Nov, 2007 (LINK)

Kimura, Momoko and Yamamoto, Tae and Zhang, Jianyong and Itoh, Ken and Kyo, Motoki and Kamiya, Terue and Aburatani, Hiroyuki and Katsuoka, Fumiki and Kurokawa, Hirofumi and Tanaka, Toshiyuki and Motohashi, Hozumi and Yamamoto, Masayuki

Molecular basis distinguishing the DNA binding profile of Nrf2-Maf heterodimer from that of Maf homodimer.

The Journal of biological chemistry, Nov, 2007 (LINK)

Toyama, Takashi and Sumi, Daigo and Shinkai, Yasuhiro and Yasutake, Akira and Taguchi, Keiko and Tong, Kit I. and Yamamoto, Masayuki and Kumagai, Yoshito

Cytoprotective role of Nrf2/Keap1 system in methylmercury toxicity.

Biochemical and biophysical research communications, Nov, 2007 (LINK)

Tong, Kit I. and Padmanabhan, Balasundaram and Kobayashi, Akira and Shang, Chengwei and Hirotsu, Yosuke and Yokoyama, Shigeyuki and Yamamoto, Masayuki

Different electrostatic potentials define ETGE and DLG motifs as hinge and latch in oxidative stress response.

Molecular and cellular biology, Nov, 2007 (LINK)

Maher, Jonathan M. and Dieter, Matthew Z. and Aleksunes, Lauren M. and Slitt, Angela L. and Guo, Grace and Tanaka, Yuji and Scheffer, George L. and Chan, Jefferson Y. and Manautou, Jose E. and Chen, Ying and Dalton, Timothy P. and Yamamoto, Masayuki and Klaassen, Curtis D.

Oxidative and electrophilic stress induces multidrug resistance-associated protein transporters via the nuclear factor-E2-related factor-2 transcriptional pathway.

Hepatology (Baltimore, Md.), Nov, 2007 (LINK)

Watai, Yoriko and Kobayashi, Akira and Nagase, Hiroko and Mizukami, Mio and McEvoy, Justina and Singer, Jeffrey D. and Itoh, Ken and Yamamoto, Masayuki

Subcellular localization and cytoplasmic complex status of endogenous Keap1.

Genes to cells : devoted to molecular & cellular mechanisms, Oct, 2007 (LINK)

Maher, Jonathan and Yamamoto, Masayuki

The Rise of Antioxidant Signaling-The Evolution and Hormetic Actions of Nrf2.

Toxicology and applied pharmacology, Jan, 2010 (LINK)

Ogura, Toshihiko and Tong, Kit I. and Mio, Kazuhiro and Maruyama, Yuusuke and Kurokawa, Hirofumi and Sato, Chikara and Yamamoto, Masayuki

Keap1 is a forked-stem dimer structure with two large spheres enclosing the intervening, double glycine repeat, and C-terminal domains.

Proceedings of the National Academy of Sciences of the United States of America, Jan, 2010 (LINK)

Kurokawa, Hirofumi and Motohashi, Hozumi and Sueno, Shinji and Kimura, Momoko and Takagawa, Hiroaki and Kanno, Yousuke and Yamamoto, Masayuki and Tanaka, Toshiyuki

Structural Basis of Alternative DNA Recognition by Maf Transcription Factors.

Molecular and cellular biology, Sep, 2009 (LINK)

Yates, Melinda S. and Tran, Quynh T. and Dolan, Patrick M. and Osburn, William O. and Shin, Soona and McCulloch, Colin C. and Silkworth, Jay B. and Taguchi, Keiko and Yamamoto, Masayuki and Williams, Charlotte R. and Liby, Karen T. and Sporn, Michael B. and Sutter, Thomas R. and Kensler, Thomas W.

Genetic versus chemoprotective activation of Nrf2 signaling: overlapping yet distinct gene expression profiles between Keap1 knockout and triterpenoid-treated mice.

Carcinogenesis, Jun, 2009 (LINK)

Reddy, Narsa M. and Kleeberger, Steven R. and Kensler, Thomas W. and Yamamoto, Masayuki and Hassoun, Paul M. and Reddy, Sekhar P.

Disruption of Nrf2 impairs the resolution of hyperoxia-induced acute lung injury and inflammation in mice.

Journal of immunology (Baltimore, Md. : 1950), Jun, 2009 (LINK)

Higgins, Larry G. and Kelleher, Michael O. and Eggleston, Ian M. and Itoh, Ken and Yamamoto, Masayuki and Hayes, John D.

Transcription factor Nrf2 mediates an adaptive response to sulforaphane that protects fibroblasts in vitro against the cytotoxic effects of electrophiles, peroxides and redox-cycling agents.

Toxicology and applied pharmacology, Jun, 2009 (LINK)

Liu, Manchang and Grigoryev, Dmitry N. and Crow, Michael T. and Haas, Mark and Yamamoto, Masayuki and Reddy, Sekhar P. and Rabb, Hamid

Transcription factor Nrf2 is protective during ischemic and nephrotoxic acute kidney injury in mice.

Kidney international, May, 2009 (LINK)

Homma, Shinsuke and Ishii, Yukio and Morishima, Yuko and Yamadori, Tadahiro and Matsuno, Yosuke and Haraguchi, Norihiro and Kikuchi, Norihiro and Satoh, Hiroaki and Sakamoto, Tohru and Hizawa, Nobuyuki and Itoh, Ken and Yamamoto, Masayuki

Nrf2 enhances cell proliferation and resistance to anticancer drugs in human lung cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research, May, 2009 (LINK)

Abe, Kanako and Shimizu, Ritsuko and Pan, Xiaoqing and Hamada, Hiromi and Yoshikawa, Hiroyuki and Yamamoto, Masayuki

Stem cells of GATA1-related leukemia undergo pernicious changes after 5-fluorouracil treatment.

Experimental hematology, Apr, 2009 (LINK)

Reisman, Scott A. and Yeager, Ronnie L. and Yamamoto, Masayuki and Klaassen, Curtis D.

Increased Nrf2 activation in livers from Keap1-knockdown mice increases expression of cytoprotective genes that detoxify electrophiles more than those that detoxify reactive oxygen species.

Toxicological sciences : an official journal of the Society of Toxicology, Mar, 2009 (LINK)

Satoh, Takumi and Harada, Nobuhiko and Hosoya, Tomonori and Tohyama, Koujiro and Yamamoto, Masayuki and Itoh, Ken

Keap1/Nrf2 system regulates neuronal survival as revealed through study of keap1 gene-knockout mice.

Biochemical and biophysical research communications, Mar, 2009 (LINK)

Suzuki, Mikiko and Moriguchi, Takashi and Ohneda, Kinuko and Yamamoto, Masayuki

Differential contribution of the Gata1 gene hematopoietic enhancer to erythroid differentiation.

Molecular and cellular biology, Mar, 2009 (LINK)

Kobayashi, Makoto and Li, Li and Iwamoto, Noriko and Nakajima-Takagi, Yaeko and Kaneko, Hiroshi and Nakayama, Yuko and Eguchi, Masami and Wada, Yoshiko and Kumagai, Yoshito and Yamamoto, Masayuki

The antioxidant defense system Keap1-Nrf2 comprises a multiple sensing mechanism for responding to a wide range of chemical compounds.

Molecular and cellular biology, Jan, 2009 (LINK)

Maruyama, Atsushi and Tsukamoto, Saho and Nishikawa, Keizo and Yoshida, Aruto and Harada, Nobuhiko and Motojima, Kiyoto and Ishii, Tetsuro and Nakane, Akio and Yamamoto, Masayuki and Itoh, Ken

Nrf2 regulates the alternative first exons of CD36 in macrophages through specific antioxidant response elements.

Archives of biochemistry and biophysics, Sep, 2008 (LINK)

Tong, Kit I. and Yamamoto, Masayuki and Tanaka, Toshiyuki

A simple method for amino acid selective isotope labeling of recombinant proteins in E. coli.

Journal of biomolecular NMR, Sep, 2008 (LINK)

Shibata, Tatsuhiro and Ohta, Tsutomu and Tong, Kit I. and Kokubu, Akiko and Odogawa, Reiko and Tsuta, Koji and Asamura, Hisao and Yamamoto, Masayuki and Hirohashi, Setsuo

Cancer related mutations in NRF2 impair its recognition by Keap1-Cul3 E3 ligase and promote malignancy.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2008 (LINK)

Osburn, William O. and Yates, Melinda S. and Dolan, Patrick D. and Chen, Sining and Liby, Karen T. and Sporn, Michael B. and Taguchi, Keiko and Yamamoto, Masayuki and Kensler, Thomas W.

Genetic or pharmacologic amplification of nrf2 signaling inhibits acute inflammatory liver injury in mice.

Toxicological sciences : an official journal of the Society of Toxicology, Jul, 2008 (LINK)

Padmanabhan, Balasundaram and Tong, Kit I. and Kobayashi, Akira and Yamamoto, Masayuki and Yokoyama, Shigeyuki

Structural insights into the similar modes of Nrf2 transcription factor recognition by the cytoplasmic repressor Keap1.

Journal of synchrotron radiation, May, 2008 (LINK)

Yamamoto, Tae and Suzuki, Takafumi and Kobayashi, Akira and Wakabayashi, Junko and Maher, Jon and Motohashi, Hozumi and Yamamoto, Masayuki

Physiological significance of reactive cysteine residues of Keap1 in determining Nrf2 activity.

Molecular and cellular biology, Apr, 2008 (LINK)

Ohta, Tsutomu and Iijima, Kumiko and Miyamoto, Mamiko and Nakahara, Izumi and Tanaka, Hiroshi and Ohtsuji, Makiko and Suzuki, Takafumi and Kobayashi, Akira and Yokota, Jun and Sakiyama, Tokuki and Shibata, Tatsuhiro and Yamamoto, Masayuki and Hirohashi, Setsuo

Loss of Keap1 function activates Nrf2 and provides advantages for lung cancer cell growth.

Cancer research, Mar, 2008 (LINK)

Li, Li and Kobayashi, Makoto and Kaneko, Hiroshi and Nakajima-Takagi, Yaeko and Nakayama, Yuko and Yamamoto, Masayuki

Molecular evolution of Keap1. Two Keap1 molecules with distinctive intervening region structures are conserved among fish.

The Journal of biological chemistry, Feb, 2008 (LINK)

Suzuki, Takafumi and Kelly, Vincent P. and Motohashi, Hozumi and Nakajima, Osamu and Takahashi, Satoru and Nishimura, Susumu and Yamamoto, Masayuki

Deletion of the selenocysteine tRNA gene in macrophages and liver results in compensatory gene induction of cytoprotective enzymes by Nrf2.

The Journal of biological chemistry, Jan, 2008 (LINK)

FBB2: 15articles(top)

Akutsu, Hideo and Yagi, Hiromasa and Fujiwara, Toshimichi

[Energy conversion mechanism in H+-ATPsynthase and the role of soft interactions]

Seikagaku. The Journal of Japanese Biochemical Society, Oct, 2008 (LINK)

Takahashi, Hiroki and Akutsu, Hideo and Fujiwara, Toshimichi

A magic-angle-spinning NMR method for 1H-1H distance measurement using coherent polarization transfer in 13C-labeled organic solids.

The Journal of chemical physics, Oct, 2008 (LINK)

秀雄, 阿久津

固体高分解能NMR：構造生物学に開ける新しい視界

生物物理, 2008 (LINK)

Saita, Ei-Ichiro I. and Iino, Ryota and Suzuki, Toshiharu and Feniouk, Boris A. and Kinosita, Kazuhiko and Yoshida, Masasuke

Activation and stiffness of the inhibited states of F1-ATPase probed by single-molecule manipulation.

The Journal of biological chemistry, Feb, 2010 (LINK)

Feniouk, Boris A. and Kato-Yamada, Yasuyuki and Yoshida, Masasuke and Suzuki, Toshiharu

Conformational Transitions of Subunit varepsilon in ATP Synthase from Thermophilic Bacillus PS3.

Biophysical journal, Feb, 2010 (LINK)

Yagi, Hiromasa and Konno, Hiroki and Murakami-Fuse, Tomoe and Isu, Atsuko and Oroguchi, Tomotaka and Akutsu, Hideo and Ikeguchi, Mitsunori and Hisabori, Toru

Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.

The Biochemical journal, Sep, 2009 (LINK)

Hara, Toshiaki and Tainosho, Akira and Nakamura, Ken'ichiroh and Sato, Takeshi and Kawakami, Toru and Aimoto, Saburo

Peptide purification by affinity chromatography based on alpha-ketoacyl group chemistry.

Journal of peptide science : an official publication of the European Peptide Society, May, 2009 (LINK)

Tsumuraya, Masato and Furuike, Shou and Adachi, Kengo and Kinosita, Kazuhiko and Yoshida, Masasuke

Effect of epsilon subunit on the rotation of thermophilic Bacillus F1-ATPase.

FEBS letters, Apr, 2009 (LINK)

Yagi, Hiromasa and Kajiwara, Nobumoto and Iwabuchi, Tomoyuki and Izumi, Kenya and Yoshida, Masasuke and Akutsu, Hideo

Stepwise propagation of the ATP-induced conformational change of the F1-ATPase beta subunit revealed by NMR.

The Journal of biological chemistry, Jan, 2009 (LINK)

Takayama, Yuki and Werbeck, Nicolas D. and Komori, Hirofumi and Morita, Kumiko and Ozawa, Kiyoshi and Higuchi, Yoshiki and Akutsu, Hideo

Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.

Biochemistry, Sep, 2008 (LINK)

Nakamura, Tsutomu and Mine, Shouhei and Hagihara, Yoshihisa and Ishikawa, Kazuhiko and Ikegami, Takahisa and Uegaki, Koichi

Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.

Journal of molecular biology, Sep, 2008 (LINK)

Kobayashi, Masatoshi and Struts, Andrey V. and Fujiwara, Toshimichi and Brown, Michael F. and Akutsu, Hideo

Fluid mechanical matching of H+-ATP synthase subunit c-ring with lipid membranes revealed by 2H solid-state NMR.

Biophysical journal, Jun, 2008 (LINK)

Kobayashi, Masumi and Yagi, Hiromasa and Yamazaki, Toshio and Yoshida, Masasuke and Akutsu, Hideo

Dynamic inter-subunit interactions in thermophilic F(1)-ATPase subcomplexes studied by cross-correlated relaxation-enhanced polarization transfer NMR.

Journal of biomolecular NMR, Mar, 2008 (LINK)

Matsuki, Yoh and Akutsu, Hideo and Fujiwara, Toshimichi

Spectral fitting for signal assignment and structural analysis of uniformly 13C-labeled solid proteins by simulated annealing based on chemical shifts and spin dynamics.

Journal of biomolecular NMR, Aug, 2007 (LINK)

Yagi, Hiromasa and Kajiwara, Nobumoto and Tanaka, Hideaki and Tsukihara, Tomitake and Kato-Yamada, Yasuyuki and Yoshida, Masasuke and Akutsu, Hideo

Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1.

Proceedings of the National Academy of Sciences of the United States of America, Jul, 2007 (LINK)

FBB3: 10articles(top)

Shinzawa-Itoh, Kyoko and Yoshikawa, Shinya

Bovine heart NADH-ubiquinone oxidoreductase contains one molecule of ubiquinone with 10 isoprene units as one of the cofactors.

Biochemistry, Dec, 2009 (LINK)

Ikemura, Kenichiro and Mukai, Masahiro and Shimada, Hideo and Tsukihara, Tomitake and Yamaguchi, Satoru and Shinzawa-Itoh, Kyoko and Yoshikawa, Shinya and Ogura, Takashi

Red-excitation resonance Raman analysis of the nu(Fe=O) mode of ferryl-oxo hemoproteins.

Journal of the American Chemical Society, Nov, 2008 (LINK)

Ohnishi, Tomoko and Ohnishi, S. Tsuyoshi and Shinzawa-Ito, Kyoko and Yoshikawa, Shinya

Functional role of coenzyme Q in the energy coupling of NADH-CoQ oxidoreductase (Complex I): stabilization of the semiquinone state with the application of inside-positive membrane potential to proteoliposomes.

BioFactors (Oxford, England), 2008 (LINK)

Fukumura, Eiko and Sugimoto, Hiroshi and Misumi, Yuko and Ogura, Takashi and Shiro, Yoshitsugu

Cooperative binding of L-trp to human tryptophan 2,3-dioxygenase: resonance Raman spectroscopic analysis.

Journal of biochemistry, Apr, 2009 (LINK)

Kunishita, Atsushi and Kubo, Minoru and Sugimoto, Hideki and Ogura, Takashi and Sato, Kazunobu and Takui, Takeji and Itoh, Shinobu

Mononuclear Copper(II)-Superoxo Complexes that Mimic the Structure and Reactivity of the Active Centers of PHM and DbetaM.

Journal of the American Chemical Society, Feb, 2009 (LINK)

Sakurai, Keisuke and Shimada, Hideo and Hayashi, Takashi and Tsukihara, Tomitake

Substrate binding induces structural changes in cytochrome P450cam.

Acta crystallographica. Section F, Structural biology and crystallization communications, Feb, 2009 (LINK)

Hayashi, Takashi and Harada, Katsuyoshi and Sakurai, Keisuke and Shimada, Hideo and Hirota, Shun

A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site.

Journal of the American Chemical Society, Feb, 2009 (LINK)

Aoyama, Hiroshi and Muramoto, Kazumasa and Shinzawa-Itoh, Kyoko and Hirata, Kunio and Yamashita, Eiki and Tsukihara, Tomitake and Ogura, Takashi and Yoshikawa, Shinya

A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump.

Proceedings of the National Academy of Sciences of the United States of America, Feb, 2009 (LINK)

Nakamaru-Ogiso, Eiko and Matsuno-Yagi, Akemi and Yoshikawa, Shinya and Yagi, Takao and Ohnishi, Tomoko

Iron-sulfur cluster N5 is coordinated by an HXXXCXXCXXXXXC motif in the NuoG subunit of Escherichia coli NADH:quinone oxidoreductase (complex I).

The Journal of biological chemistry, Sep, 2008 (LINK)

Harada, Katsuyoshi and Sakurai, Keisuke and Ikemura, Kenichiro and Ogura, Takashi and Hirota, Shun and Shimada, Hideo and Hayashi, Takashi

Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam.

Journal of the American Chemical Society, Jan, 2008 (LINK)

FBB4: 17articles(top)

Maher, Megan J. and Akimoto, Satoru and Iwata, Momi and Nagata, Koji and Hori, Yoshiko and Yoshida, Masasuke and Yokoyama, Shigeyuki and Iwata, So and Yokoyama, Ken

Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.

The EMBO journal, Nov, 2009 (LINK)

Arai, Satoshi and Yamato, Ichiro and Shiokawa, Asuka and Saijo, Shinya and Kakinuma, Yoshimi and Ishizuka-Katsura, Yoshiko and Toyama, Mitsutoshi and Terada, Takaho and Shirouzu, Mikako and Yokoyama, Shigeyuki and Iwata, So and Murata, Takeshi

Reconstitution in vitro of the catalytic portion (NtpA(3)-B(3)-D-G complex) of Enterococcus hirae V-type Na(+)-ATPase.

Biochemical and biophysical research communications, Oct, 2009 (LINK)

Inai, Makoto and Goto, Toshihiro and Furuta, Takumi and Wakimoto, Toshiyuki and Kan, Toshiyuki

Stereocontrolled total synthesis of (−)-myriocin

Tetrahedron: Asymmetry, Dec, 2008 (LINK)

Koizumi, Yasuaki and Kobayashi, Hideki and Wakimoto, Toshiyuki and Furuta, Takumi and Fukuyama, Tohru and Kan, Toshiyuki

Total synthesis of (-)-serotobenine.

Journal of the American Chemical Society, Dec, 2008 (LINK)

Furuta, Takumi and Mochizuki, Masayoshi and Ito, Mai and Takahashi, Tadanobu and Suzuki, Takashi and Kan, Toshiyuki

Versatile synthesis of head group functionalized phospholipids via oxime bond formation.

Organic letters, Nov, 2008 (LINK)

Furuta, T. and Ueda, M. and Hirooka, Y. and Tanaka, K. and Kan, T.

Synthesis of diazirine possessing an acetophenone derivative as a valuable intermediate for a flavonoid photoaffinity probe

Heterocycles, 2008

Suenaga, Atsushi and Umezu, Osamu and Ando, Tadashi and Yamato, Ichiro and Murata, Takeshi and Taiji, Makoto

Estimation of Ligand Binding Free Energies of F-ATPase by Using Molecular Dynamics/Free Energy Calculation

Journal of Computer Chemistry, Japan, 2008 (LINK)

Toei, Masashi and Gerle, Christoph and Nakano, Masahiro and Tani, Kazutoshi and Gyobu, Nobuhiko and Tamakoshi, Masatada and Sone, Nobuhito and Yoshida, Masasuke and Fujiyoshi, Yoshinori and Mitsuoka, Kaoru and Yokoyama, Ken

Dodecamer rotor ring defines H+/ATP ratio for ATP synthesis of prokaryotic V-ATPase from Thermus thermophilus.

Proceedings of the National Academy of Sciences of the United States of America, Dec, 2007 (LINK)

Kanno, Ryo and Koike-Takeshita, Ayumi and Yokoyama, Ken and Taguchi, Hideki and Mitsuoka, Kaoru

Cryo-EM structure of the native GroEL-GroES complex from thermus thermophilus encapsulating substrate inside the cavity.

Structure (London, England : 1993), Feb, 2009 (LINK)

Takeda, Mizuho and Suno-Ikeda, Chiyo and Shimabukuro, Katsuya and Yoshida, Masasuke and Yokoyama, Ken

Mechanism of inhibition of the V-type molecular motor by tributyltin chloride.

Biophysical journal, Feb, 2009 (LINK)

Kita, Yoichi and Toma, Tatsuya and Kan, Toshiyuki and Fukuyama, Tohru

Synthetic studies on (+)-manzamine A: stereoselective synthesis of the tetracyclic core framework.

Organic letters, Aug, 2008 (LINK)

Nakano, Masahiro and Imamura, Hiromi and Toei, Masashi and Tamakoshi, Masatada and Yoshida, Masasuke and Yokoyama, Ken

ATP hydrolysis and synthesis of a rotary motor V-ATPase from Thermus thermophilus.

The Journal of biological chemistry, Jul, 2008 (LINK)

Jormakka, Mika and Yokoyama, Ken and Yano, Takahiro and Tamakoshi, Masatada and Akimoto, Satoru and Shimamura, Tatsuro and Curmi, Paul and Iwata, So

Molecular mechanism of energy conservation in polysulfide respiration.

Nature structural & molecular biology, Jul, 2008 (LINK)

Ito, Keisuke and Sugawara, Taishi and Shiroishi, Mitsunori and Tokuda, Natsuko and Kurokawa, Azusa and Misaka, Takumi and Makyio, Hisayoshi and Yurugi-Kobayashi, Takami and Shimamura, Tatsuro and Nomura, Norimichi and Murata, Takeshi and Abe, Keiko and Iwata, So and Kobayashi, Takuya

Advanced method for high-throughput expression of mutated eukaryotic membrane proteins in Saccharomyces cerevisiae.

Biochemical and biophysical research communications, Jul, 2008 (LINK)

Yamamoto, Misaki and Unzai, Satoru and Saijo, Shinya and Ito, Kazuki and Mizutani, Kenji and Suno-Ikeda, Chiyo and Yabuki-Miyata, Yukako and Terada, Takaho and Toyama, Mitsutoshi and Shirouzu, Mikako and Kobayashi, Takuya and Kakinuma, Yoshimi and Yamato, Ichiro and Yokoyama, Shigeyuki and Iwata, So and Murata, Takeshi

Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase.

The Journal of biological chemistry, Jul, 2008 (LINK)

Murata, Takeshi and Yamato, Ichiro and Kakinuma, Yoshimi and Shirouzu, Mikako and Walker, John E. and Yokoyama, Shigeyuki and Iwata, So

Ion binding and selectivity of the rotor ring of the Na+-transporting V-ATPase.

Proceedings of the National Academy of Sciences of the United States of America, Jun, 2008 (LINK)

Kitamura, Yuki and Yoshikawa, Seiji and Furuta, Takumi and Kan, Toshiyuki

ChemInform Abstract: One-Pot Synthesis of Carbazole via Tandem Suzuki-Miyaura and Amination Reaction.

ChemInform, May, 2008 (LINK)

FBB5: 50articles(top)

Wakiyama, Motoaki and Yokoyama, Shigeyuki

MicroRNA-Mediated mRNA Deadenylation and Repression of Protein Synthesis in a Mammalian Cell-Free System.

Progress in molecular and subcellular biology, 2010 (LINK)

Naganuma, Takao and Nomura, Naoko and Yao, Min and Mochizuki, Masahiro and Uchiumi, Toshio and Tanaka, Isao

Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes.

The Journal of biological chemistry, Dec, 2009 (LINK)

Kimura, Satoshi and Suzuki, Tsutomu

Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.

Nucleic acids research, Dec, 2009 (LINK)

Suzuki, Tsutomu and Miyauchi, Kenjyo

Discovery and characterization of tRNA(Ile) lysidine synthetase (TilS).

FEBS letters, Nov, 2009 (LINK)

Nakamura, Akiyoshi and Sheppard, Kelly and Yamane, Junji and Yao, Min and Söll, Dieter and Tanaka, Isao

Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition.

Nucleic acids research, Nov, 2009 (LINK)

Nakanishi, Kotaro and Bonnefond, Luc and Kimura, Satoshi and Suzuki, Tsutomu and Ishitani, Ryuichiro and Nureki, Osamu

Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase

Nature, Oct, 2009 (LINK)

Saito, Kuniaki and Inagaki, Sachi and Mituyama, Toutai and Kawamura, Yoshinori and Ono, Yukiteru and Sakota, Eri and Kotani, Hazuki and Asai, Kiyoshi and Siomi, Haruhiko and Siomi, Mikiko C.

A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila

Nature, Oct, 2009 (LINK)

Goto-Ito, Sakurako and Ito, Takuhiro and Kuratani, Mitsuo and Bessho, Yoshitaka and Yokoyama, Shigeyuki

Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation.

Nature structural & molecular biology, Oct, 2009 (LINK)

Ihsanawati and Nishimoto, Madoka and Higashijima, Kyoko and Shirouzu, Mikako and Grosjean, Henri and Bessho, Yoshitaka and Yokoyama, Shigeyuki

Crystal structure of tRNA N2,N2-guanosine dimethyltransferase Trm1 from Pyrococcus horikoshii.

Journal of molecular biology, Nov, 2008 (LINK)

Tsukazaki, Tomoya and Mori, Hiroyuki and Fukai, Shuya and Ishitani, Ryuichiro and Mori, Takaharu and Dohmae, Naoshi and Perederina, Anna and Sugita, Yuji and Vassylyev, Dmitry G. and Ito, Koreaki and Nureki, Osamu

Conformational transition of Sec machinery inferred from bacterial SecYE structures.

Nature, Oct, 2008 (LINK)

Nagao, Asuteka and Hino-Shigi, Narumi and Suzuki, Tsutomu

Measuring mRNA decay in human mitochondria.

Methods in enzymology, 2008 (LINK)

Funakoshi, Yuji and Doi, Yusuke and Hosoda, Nao and Uchida, Naoyuki and Osawa, Masanori and Shimada, Ichio and Tsujimoto, Masafumi and Suzuki, Tsutomu and Katada, Toshiaki and Hoshino, Shin-ichi

Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.

Genes & development, Dec, 2007 (LINK)

Datta, Partha P. and Wilson, Daniel N. and Kawazoe, Masahito and Swami, Neil K. and Kaminishi, Tatsuya and Sharma, Manjuli R. and Booth, Timothy M. and Takemoto, Chie and Fucini, Paola and Yokoyama, Shigeyuki and Agrawal, Rajendra K.

Structural aspects of RbfA action during small ribosomal subunit assembly.

Molecular cell, Nov, 2007 (LINK)

Tsutsumi, Satoshi and Sugiura, Reiko and Ma, Yan and Tokuoka, Hideki and Ohta, Kazuki and Ohte, Rieko and Noma, Akiko and Suzuki, Tsutomu and Kuno, Takayoshi

Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast.

The Journal of biological chemistry, Nov, 2007 (LINK)

Goto-Ito, Sakurako and Ishii, Ryohei and Ito, Takuhiro and Shibata, Rie and Fusatomi, Emiko and Sekine, Shun Ichi I. and Bessho, Yoshitaka and Yokoyama, Shigeyuki

Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis.

Acta crystallographica. Section D, Biological crystallography, Oct, 2007 (LINK)

Levengood, Jeffrey D. and Roy, Hervé and Ishitani, Ryuichiro and Söll, Dieter and Nureki, Osamu and Ibba, Michael

Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase.

Biochemistry, Oct, 2007 (LINK)

Suzuki, Yoko and Noma, Akiko and Suzuki, Tsutomu and Senda, Miki and Senda, Toshiya and Ishitani, Ryuichiro and Nureki, Osamu

Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA.

Journal of molecular biology, Oct, 2007 (LINK)

Tomita, Kozo and Numata, Tomoyuki and Fukai, Tsutomu and Nureki, Shuya and Ishitani, Ryuichiro and Nureki, Osamu

Animated crystallography of genetic code translation.

Nucleic acids symposium series (2004), 2007 (LINK)

Ikeuchi, Yoshiho and Kimura, Satoshi and Numata, Tomoyuki and Nakamura, Daigo and Yokogawa, Takashi and Ogata, Toshihiko and Wada, Takeshi and Suzuki, Takeo and Suzuki, Tsutomu

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

Nature chemical biology, Feb, 2010 (LINK)

Siomi, Mikiko C. and Miyoshi, Tomohiro and Siomi, Haruhiko

piRNA-mediated silencing in Drosophila germlines.

Seminars in cell & developmental biology, Jan, 2010 (LINK)

Umitsu, Masataka and Nishimasu, Hiroshi and Noma, Akiko and Suzuki, Tsutomu and Ishitani, Ryuichiro and Nureki, Osamu

Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2009 (LINK)

Nagao, Asuteka and Suzuki, Takeo and Katoh, Takayuki and Sakaguchi, Yuriko and Suzuki, Tsutomu

Biogenesis of glutaminyl-mt tRNAGln in human mitochondria.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2009 (LINK)

Araiso, Yuhei and Sherrer, R. Lynn and Ishitani, Ryuichiro and Ho, Joanne M. and Söll, Dieter and Nureki, Osamu

Structure of a tRNA-dependent kinase essential for selenocysteine decoding.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2009 (LINK)

Tanaka, Yoshikazu and Yamagata, Shiori and Kitago, Yu and Yamada, Yoko and Chimnaronk, Sarin and Yao, Min and Tanaka, Isao

Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand.

RNA (New York, N.Y.), Aug, 2009 (LINK)

Hiyama, Takuya B. and Ito, Takuhiro and Imataka, Hiroaki and Yokoyama, Shigeyuki

Crystal Structure of the alpha Subunit of Human Translation Initiation Factor 2B.

Journal of molecular biology, Jul, 2009 (LINK)

Sokabe, Masaaki and Ose, Toyoyuki and Nakamura, Akiyoshi and Tokunaga, Keita and Nureki, Osamu and Yao, Min and Tanaka, Isao

The structure of alanyl-tRNA synthetase with editing domain.

Proceedings of the National Academy of Sciences of the United States of America, Jul, 2009 (LINK)

Chimnaronk, Sarin and Forouhar, Farhad and Sakai, Junichi and Yao, Min and Tron, Cecile M. and Atta, Mohamed and Fontecave, Marc and Hunt, John F. and Tanaka, Isao

Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon.

Biochemistry, Jun, 2009 (LINK)

Osawa, Takuo and Ito, Koichi and Inanaga, Hideko and Nureki, Osamu and Tomita, Kozo and Numata, Tomoyuki

Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon.

Structure (London, England : 1993), May, 2009 (LINK)

Nishimasu, Hiroshi and Ishitani, Ryuichiro and Yamashita, Koki and Iwashita, Chikako and Hirata, Akira and Hori, Hiroyuki and Nureki, Osamu

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase.

Proceedings of the National Academy of Sciences of the United States of America, May, 2009 (LINK)

Chimnaronk, Sarin and Suzuki, Tateki and Manita, Tetsuhiro and Ikeuchi, Yoshiho and Yao, Min and Suzuki, Tsutomu and Tanaka, Isao

RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon.

The EMBO journal, May, 2009 (LINK)

Suzuki, Yoko and Noma, Akiko and Suzuki, Tsutomu and Ishitani, Ryuichiro and Nureki, Osamu

Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.

Nucleic acids research, May, 2009 (LINK)

Katoh, Takayuki and Sakaguchi, Yuriko and Miyauchi, Kenjyo and Suzuki, Takeo and Kashiwabara, Shin-ichi and Baba, Tadashi and Suzuki, Tsutomu

Selective stabilization of mammalian microRNAs by 3\^{a}€² adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2

Genes & Development, Feb, 2009 (LINK)

Itoh, Yuzuru and Sekine, Shun-ichi and Matsumoto, Eiko and Akasaka, Ryogo and Takemoto, Chie and Shirouzu, Mikako and Yokoyama, Shigeyuki

Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs.

Journal of molecular biology, Feb, 2009 (LINK)

Nozawa, Kayo and O'Donoghue, Patrick and Gundllapalli, Sarath and Araiso, Yuhei and Ishitani, Ryuichiro and Umehara, Takuya and Söll, Dieter and Nureki, Osamu

Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality.

Nature, Feb, 2009 (LINK)

Siomi, Haruhiko and Siomi, Mikiko C.

On the road to reading the RNA-interference code

Nature, Jan, 2009 (LINK)

Goto-Ito, Sakurako and Ito, Takuhiro and Ishii, Ryohei and Muto, Yutaka and Bessho, Yoshitaka and Yokoyama, Shigeyuki

Crystal structure of archaeal tRNA(m¹G37)methyltransferase aTrm5

Proteins: Structure, Function, and Bioinformatics, Sep, 2008 (LINK)

Ikeuchi, Yoshiho and Kitahara, Kei and Suzuki, Tsutomu

The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon.

The EMBO journal, Aug, 2008 (LINK)

Kurata, Shinya and Weixlbaumer, Albert and Ohtsuki, Takashi and Shimazaki, Tomomi and Wada, Takeshi and Kirino, Yohei and Takai, Kazuyuki and Watanabe, Kimitsuna and Ramakrishnan, V. and Suzuki, Tsutomu

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.

The Journal of biological chemistry, Jul, 2008 (LINK)

Toh, Yukimatsu and Numata, Tomoyuki and Watanabe, Kazunori and Takeshita, Daijiro and Nureki, Osamu and Tomita, Kozo

Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme.

The EMBO journal, Jul, 2008 (LINK)

Yokoyama, Takeshi and Suzuki, Tsutomu

Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments.

Nucleic acids research, Jun, 2008 (LINK)

Azuma-Mukai, Asuka and Oguri, Hideo and Mituyama, Toutai and Qian, Zhi Rong R. and Asai, Kiyoshi and Siomi, Haruhiko and Siomi, Mikiko C.

Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing.

Proceedings of the National Academy of Sciences of the United States of America, Jun, 2008 (LINK)

Kawamura, Yoshinori and Saito, Kuniaki and Kin, Taishin and Ono, Yukiteru and Asai, Kiyoshi and Sunohara, Takafumi and Okada, Tomoko N. and Siomi, Mikiko C. and Siomi, Haruhiko

Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells.

Nature, Jun, 2008 (LINK)

Ishitani, Ryuichiro and Yokoyama, Shigeyuki and Nureki, Osamu

Structure, dynamics, and function of RNA modification enzymes.

Current opinion in structural biology, Jun, 2008 (LINK)

Nureki, Osamu

[Dynamic mechanism of CCA-adding polymerization reaction]

Seikagaku. The Journal of Japanese Biochemical Society, May, 2008 (LINK)

Siomi, Haruhiko and Siomi, Mikiko C.

Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution.

Current opinion in genetics & development, Apr, 2008 (LINK)

Araiso, Yuhei and Palioura, Sotiria and Ishitani, Ryuichiro and Sherrer, R. Lynn and O'Donoghue, Patrick and Yuan, Jing and Oshikane, Hiroyuki and Domae, Naoshi and Defranco, Julian and Söll, Dieter and Nureki, Osamu

Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.

Nucleic acids research, Mar, 2008 (LINK)

Takehara, Masahide and Ino, Keita and Takakusagi, Yoichi and Oshikane, Hiroyuki and Nureki, Osamu and Ebina, Takeo and Mizukami, Fujio and Sakaguchi, Kengo

Use of layer silicate for protein crystallization: effects of Micromica and chlorite powders in hanging drops.

Analytical biochemistry, Feb, 2008 (LINK)

Kuratani, Mitsuo and Bessho, Yoshitaka and Nishimoto, Madoka and Grosjean, Henri and Yokoyama, Shigeyuki

Crystal structure and mutational study of a unique SpoU family archaeal methylase that forms 2'-O-methylcytidine at position 56 of tRNA.

Journal of molecular biology, Jan, 2008 (LINK)

Wakiyama, Motoaki and Takimoto, Koji and Ohara, Osamu and Yokoyama, Shigeyuki

Let-7 microRNA-mediated mRNA deadenylation and translational repression in a mammalian cell-free system.

Genes & development, Aug, 2007 (LINK)

Saito, Kuniaki and Sakaguchi, Yuriko and Suzuki, Takeo and Suzuki, Tsutomu and Siomi, Haruhiko and Siomi, Mikiko C.

Pimet, the Drosophila homolog of HEN1, mediates 2'-O-methylation of Piwi- interacting RNAs at their 3' ends.

Genes & development, Jul, 2007 (LINK)

Medicine/Pharmacology

MPA1: 23articles(top)

Kumar, Himanshu and Kumagai, Yutaro and Tsuchida, Tetsuo and Koenig, Paul A. and Satoh, Takashi and Guo, Zijin and Jang, Myoung Ho H. and Saitoh, Tatsuya and Akira, Shizuo and Kawai, Taro

Involvement of the NLRP3 inflammasome in innate and humoral adaptive immune responses to fungal beta-glucan.

Journal of immunology (Baltimore, Md. : 1950), Dec, 2009 (LINK)

Saitoh, Tatsuya and Fujita, Naonobu and Hayashi, Takuya and Takahara, Keigo and Satoh, Takashi and Lee, Hanna and Matsunaga, Kohichi and Kageyama, Shun and Omori, Hiroko and Noda, Takeshi and Yamamoto, Naoki and Kawai, Taro and Ishii, Ken and Takeuchi, Osamu and Yoshimori, Tamotsu and Akira, Shizuo

Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response

Proceedings of the National Academy of Sciences, Dec, 2009 (LINK)

Uematsu, Satoshi and Akira, Shizuo

Immune responses of TLR5(+) lamina propria dendritic cells in enterobacterial infection.

Journal of gastroenterology, 2009 (LINK)

Ishii, Ken J. and Akira, Shizuo

Potential link between the immune system and metabolism of nucleic acids.

Current opinion in immunology, Oct, 2008 (LINK)

Kagaku dojin

Saishin bunshi mashin : nano de hataraku kodo na kikai o mezashite, 2008 (LINK)

Kume, Kazuhiko

Tokushu nemuri o meguru baioroji, 2008 (LINK)

Coban, Cevayir and Koyama, Shohei and Takeshita, Fumihiko and Akira, Shizuo and Ishii, Ken J.

Molecular and cellular mechanisms of DNA vaccines.

Human vaccines, 2008 (LINK)

Koyama, Shohei and Ishii, Ken J. and Kumar, Himanshu and Tanimoto, Takeshi and Coban, Cevayir and Uematsu, Satoshi and Kawai, Taro and Akira, Shizuo

Differential role of TLR- and RLR-signaling in the immune responses to influenza A virus infection and vaccination.

Journal of immunology (Baltimore, Md. : 1950), Oct, 2007 (LINK)

Coban, Cevayir and Igari, Yoshikatsu and Yagi, Masanori and Reimer, Thornik and Koyama, Shohei and Aoshi, Taiki and Ohata, Keiichi and Tsukui, Toshihiro and Takeshita, Fumihiko and Sakurai, Kazuo and Ikegami, Takahisa and Nakagawa, Atsushi and Horii, Toshihiro and Nu\~{n}ez, Gabriel and Ishii, Ken J. and Akira, Shizuo

Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.

Cell host & microbe, Jan, 2010 (LINK)

Satoh, Takashi and Kato, Hiroki and Kumagai, Yutaro and Yoneyama, Mitsutoshi and Sato, Shintaro and Matsushita, Kazufumi and Tsujimura, Tohru and Fujita, Takashi and Akira, Shizuo and Takeuchi, Osamu

LGP2 is a positive regulator of RIG-I- and MDA5-mediated antiviral responses.

Proceedings of the National Academy of Sciences of the United States of America, Jan, 2010 (LINK)

Kumar, Himanshu and Kawai, Taro and Akira, Shizuo

Toll-like receptors and innate immunity.

Biochemical and biophysical research communications, Aug, 2009 (LINK)

Kawagoe, Tatsukata and Takeuchi, Osamu and Takabatake, Yoshitsugu and Kato, Hiroki and Isaka, Yoshitaka and Tsujimura, Tohru and Akira, Shizuo

TANK is a negative regulator of Toll-like receptor signaling and is critical for the prevention of autoimmune nephritis

Nat Immunol, Aug, 2009 (LINK)

Miyake, Tohru and Kumagai, Yutaro and Kato, Hiroki and Guo, Zijin and Matsushita, Kazufumi and Satoh, Takashi and Kawagoe, Tatsukata and Kumar, Himanshu and Jang, Myoung Ho H. and Kawai, Taro and Tani, Tohru and Takeuchi, Osamu and Akira, Shizuo

Poly I:C-induced activation of NK cells by CD8alpha+ dendritic cells via the IPS-1 and TRIF-dependent pathways.

Journal of immunology (Baltimore, Md. : 1950), Aug, 2009 (LINK)

Koyama, Shohei and Coban, Cevayir and Aoshi, Taiki and Horii, Toshihiro and Akira, Shizuo and Ishii, Ken J.

Innate immune control of nucleic acid-based vaccine immunogenicity.

Expert review of vaccines, Aug, 2009 (LINK)

Kawai, Taro and Akira, Shizuo

The roles of TLRs, RLRs and NLRs in pathogen recognition.

International immunology, Apr, 2009 (LINK)

Matsushita, Kazufumi and Takeuchi, Osamu and Standley, Daron M. and Kumagai, Yutaro and Kawagoe, Tatsukata and Miyake, Tohru and Satoh, Takashi and Kato, Hiroki and Tsujimura, Tohru and Nakamura, Haruki and Akira, Shizuo

Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay.

Nature, Apr, 2009 (LINK)

Kumagai, Yutaro and Kumar, Himanshu and Koyama, Shohei and Kawai, Taro and Takeuchi, Osamu and Akira, Shizuo

Cutting Edge: TLR-Dependent viral recognition along with type I IFN positive feedback signaling masks the requirement of viral replication for IFN-{alpha} production in plasmacytoid dendritic cells.

Journal of immunology (Baltimore, Md. : 1950), Apr, 2009 (LINK)

Takeuchi, Osamu and Akira, Shizuo

Innate immunity to virus infection.

Immunological reviews, Jan, 2009 (LINK)

Koyama, Shohei and Ishii, Ken J. and Coban, Cevayir and Akira, Shizuo

Innate immune response to viral infection.

Cytokine, Sep, 2008 (LINK)

Takeshita, Fumihiko and Ishii, Ken J.

Intracellular DNA sensors in immunity.

Current opinion in immunology, Aug, 2008 (LINK)

Ishii, Ken J. and Koyama, Shohei and Nakagawa, Atsushi and Coban, Cevayir and Akira, Shizuo

Host innate immune receptors and beyond: making sense of microbial infections.

Cell host & microbe, Jun, 2008 (LINK)

Ishii, Ken J. and Kawagoe, Tatsukata and Koyama, Shohei and Matsui, Kosuke and Kumar, Himanshu and Kawai, Taro and Uematsu, Satoshi and Takeuchi, Osamu and Takeshita, Fumihiko and Coban, Cevayir and Akira, Shizuo

TANK-binding kinase-1 delineates innate and adaptive immune responses to DNA vaccines.

Nature, Feb, 2008 (LINK)

Kumar, Himanshu and Koyama, Shohei and Ishii, Ken J. and Kawai, Taro and Akira, Shizuo

Cutting edge: cooperation of IPS-1- and TRIF-dependent pathways in poly IC-enhanced antibody production and cytotoxic T cell responses.

Journal of immunology (Baltimore, Md. : 1950), Jan, 2008 (LINK)

MPA2: 5articles(top)

Nakasaki, Tae and Tanaka, Toshiyuki and Okudaira, Shinichi and Hirosawa, Michi and Umemoto, Eiji and Otani, Kazuhiro and Jin, Soojung and Bai, Zhongbin and Hayasaka, Haruko and Fukui, Yoshinori and Aozasa, Katsuyuki and Fujita, Naoya and Tsuruo, Takashi and Ozono, Keiichi and Aoki, Junken and Miyasaka, Masayuki

Involvement of the lysophosphatidic acid-generating enzyme autotaxin in lymphocyte-endothelial cell interactions.

The American journal of pathology, Nov, 2008 (LINK)

Tanaka, Yoshihiko and Hamano, Shinjiro and Gotoh, Kazuhito and Murata, Yuzo and Kunisaki, Yuya and Nishikimi, Akihiko and Takii, Ryosuke and Kawaguchi, Makiko and Inayoshi, Ayumi and Masuko, Sadahiko and Himeno, Kunisuke and Sasazuki, Takehiko and Fukui, Yoshinori

T helper type 2 differentiation and intracellular trafficking of the interleukin 4 receptor-alpha subunit controlled by the Rac activator Dock2.

Nature immunology, Oct, 2007 (LINK)

Nishikimi, Akihiko and Fukuhara, Hideo and Su, Wenjuan and Hongu, Tsunaki and Takasuga, Shunsuke and Mihara, Hisashi and Cao, Qinhong and Sanematsu, Fumiyuki and Kanai, Motomu and Hasegawa, Hiroshi and Tanaka, Yoshihiko and Shibasaki, Masakatsu and Kanaho, Yasunori and Sasaki, Takehiko and Frohman, Michael A. and Fukui, Yoshinori

Sequential regulation of DOCK2 dynamics by two phospholipids during neutrophil chemotaxis.

Science (New York, N.Y.), Apr, 2009 (LINK)

Gotoh, Kazuhito and Tanaka, Yoshihiko and Nishikimi, Akihiko and Inayoshi, Ayumi and Enjoji, Munechika and Takayanagi, Ryoichi and Sasazuki, Takehiko and Fukui, Yoshinori

Differential requirement for DOCK2 in migration of plasmacytoid dendritic cells versus myeloid dendritic cells.

Blood, Mar, 2008 (LINK)

Kikuchi, Tomoko and Kubonishi, Shiro and Shibakura, Misako and Namba, Noriko and Matsui, Toshimitsu and Fukui, Yoshinori and Tanimoto, Mitsune and Katayama, Yoshio

Dock2 participates in bone marrow lympho-hematopoiesis.

Biochemical and biophysical research communications, Feb, 2008 (LINK)

MPA3: 20articles(top)

Maita, Nobuo and Nyirenda, James and Igura, Mayumi and Kamishikiryo, Jun and Kohda, Daisuke

Comparative structural biology of Eubacterial and Archaeal oligosaccharyltransferases.

The Journal of biological chemistry, Dec, 2009 (LINK)

Ogura, Kenji and Shiga, Takanori and Yokochi, Masashi and Yuzawa, Satoru and Burke, Terrence R. and Inagaki, Fuyuhiko

Solution structure of the Grb2 SH2 domain complexed with a high-affinity inhibitor.

Journal of biomolecular NMR, Nov, 2008 (LINK)

Nishida, Kinya and Horiuchi, Masataka and Noda, Nobuo N. and Takahasi, Kiyohiro and Iwasaki, Norimasa and Minami, Akio and Inagaki, Fuyuhiko

Crystallization and preliminary crystallographic analysis of the Tob-hCaf1 complex.

Acta crystallographica. Section F, Structural biology and crystallization communications, Dec, 2007 (LINK)

Saitoh, Takashi and Igura, Mayumi and Obita, Takayuki and Ose, Toyoyuki and Kojima, Rieko and Maenaka, Katsumi and Endo, Toshiya and Kohda, Daisuke

Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states.

The EMBO journal, Nov, 2007 (LINK)

稲垣冬彦

極性発現に必要なPB1ドメイン間の相互作用

生体の科学, Oct, 2007

Hori, Shohei

tokushu seigyosei tisaibo to men'eki kojosei no mekanizumu, 2007 (LINK)

Miyano, Kei and Koga, Hirofumi and Minakami, Reiko and Sumimoto, Hideki

The insert region of the Rac GTPases is dispensable for activation of superoxide-producing NADPH oxidases.

The Biochemical journal, Sep, 2009 (LINK)

Ogura, Kenji and Tandai, Tsubasa and Yoshinaga, Sosuke and Kobashigawa, Yoshihiro and Kumeta, Hiroyuki and Ito, Takashi and Sumimoto, Hideki and Inagaki, Fuyuhiko

NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae.

Journal of biochemistry, Sep, 2009 (LINK)

Horiuchi, Masataka and Takeuchi, Kosei and Noda, Nobuo and Muroya, Nobuyuki and Suzuki, Toru and Nakamura, Takahisa and Kawamura-Tsuzuku, Junko and Takahasi, Kiyohiro and Yamamoto, Tadashi and Inagaki, Fuyuhiko

Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.

The Journal of biological chemistry, May, 2009 (LINK)

Taura, Masahiko and Miyano, Kei and Minakami, Reiko and Kamakura, Sachiko and Takeya, Ryu and Sumimoto, Hideki

A region N-terminal to the tandem SH3 domain of p47phox plays a crucial role in the activation of the phagocyte NADPH oxidase.

The Biochemical journal, Apr, 2009 (LINK)

Maehara, Yuichi and Miyano, Kei and Sumimoto, Hideki

Role for the first SH3 domain of p67phox in activation of superoxide-producing NADPH oxidases.

Biochemical and biophysical research communications, Feb, 2009 (LINK)

Honbou, Kazuya

[Crystal structure of p40(phox) and regulation mechanism of superoxide generation]

Seikagaku. The Journal of Japanese Biochemical Society, Aug, 2008 (LINK)

Sumimoto, Hideki

Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.

The FEBS journal, Jul, 2008 (LINK)

Kumeta, Hiroyuki and Ogura, Kenji and Adachi, Souichirou and Fujioka, Yuko and Tanuma, Nobuhiro and Tanuma, Kiminobu and Kikuchi, Kunimi and Inagaki, Fuyuhiko

The NMR structure of the NIPP1 FHA domain.

Journal of biomolecular NMR, Mar, 2008 (LINK)

Takahasi, Kiyohiro and Yoneyama, Mitsutoshi and Nishihori, Tatsuya and Hirai, Reiko and Kumeta, Hiroyuki and Narita, Ryo and Gale, Michael and Inagaki, Fuyuhiko and Fujita, Takashi

Nonself RNA-sensing mechanism of RIG-I helicase and activation of antiviral immune responses.

Molecular cell, Feb, 2008 (LINK)

Takeya, Ryu and Taniguchi, Kenichiro and Narumiya, Shuh and Sumimoto, Hideki

The mammalian formin FHOD1 is activated through phosphorylation by ROCK and mediates thrombin-induced stress fibre formation in endothelial cells.

The EMBO journal, Feb, 2008 (LINK)

Igura, Mayumi and Maita, Nobuo and Kamishikiryo, Jun and Yamada, Masaki and Obita, Takayuki and Maenaka, Katsumi and Kohda, Daisuke

Structure-guided identification of a new catalytic motif of oligosaccharyltransferase.

The EMBO journal, Jan, 2008 (LINK)

Kobashigawa, Yoshihiro and Naito, Masato and Inagaki, Fuyuhiko

An efficient method for protein phosphorylation using the artificially introduced of cognate-binding modules into kinases and substrates.

Journal of biotechnology, Sep, 2007 (LINK)

稲垣冬彦

Grb2 SH2の構造を基盤とした抗ガン剤の設計

医薬ジャーナル, Aug, 2007

Sumimoto, Hideki and Kamakura, Sachiko and Ito, Takashi

Structure and function of the PB1 domain, a protein interaction module conserved in animals, fungi, amoebas, and plants.

Science's STKE : signal transduction knowledge environment, Aug, 2007 (LINK)

MPA4: 14articles(top)

Yokoshima, Satoshi and Abe, Yuzo and Watanabe, Naoto and Kita, Yoichi and Kan, Toshiyuki and Iwatsubo, Takeshi and Tomita, Taisuke and Fukuyama, Tohru

Development of photoaffinity probes for gamma-secretase equipped with a nitrobenzenesulfonamide-type cleavable linker.

Bioorganic & medicinal chemistry letters, Oct, 2009 (LINK)

Hayashi, Ikuo and Takatori, Sho and Urano, Yasuomi and Iwanari, Hiroko and Isoo, Noriko and Osawa, Satoko and Fukuda, Maiko A. and Kodama, Tatsuhiko and Hamakubo, Takao and Li, Tong and Wong, Philip C. and Tomita, Taisuke and Iwatsubo, Takeshi

Single chain variable fragment against nicastrin inhibits the gamma-secretase activity.

The Journal of biological chemistry, Oct, 2009 (LINK)

Mio, K. and Ogura, T. and Maruyama, Y. and Sato, C.

Three dimensional structures of ion channels revealed by electronmicroscopy: Na channel, IP3 receptor, TRP channels and gamma-secretase.

Korean Journal of Physiology and Pharmacology, 2009

Laras, Y. and Pietrancosta, N. and Tomita, T. and Iwatsubo, T. and Kraus, J. L.

Synthesis and biological activity of N-substituted spiro[benzoxazepine-piperidine] Abeta-peptide production inhibitors.

Journal of enzyme inhibition and medicinal chemistry, Dec, 2008 (LINK)

明石知子 and 史向国 and 高見澤淳 and 西村善文 and 平岡賢三

レーザースプレー質量分析が可能にした生体高分子複合体の結合親和性の定量的な解析

Journal of the Mass Spectrometry Society of Japan, 2008

Miyazaki, Tohru and Yokoshima, Satoshi and Simizu, Siro and Osada, Hiroyuki and Tokuyama, Hidetoshi and Fukuyama, Tohru

Synthesis of (+)-vinblastine and its analogues.

Organic letters, Nov, 2007 (LINK)

Satoh, Nobuhiro and Akiba, Takahiro and Yokoshima, Satoshi and Fukuyama, Tohru

A practical synthesis of (-)-oseltamivir.

Angewandte Chemie (International ed. in English), 2007 (LINK)

Imamura, Yuki and Watanabe, Naoto and Umezawa, Naoki and Iwatsubo, Takeshi and Kato, Nobuki and Tomita, Taisuke and Higuchi, Tsunehiko

Inhibition of γ-Secretase Activity by Helical β-Peptide Foldamers

Journal of the American Chemical Society, Jun, 2009 (LINK)

Cheng, Haipeng and Vetrivel, Kulandaivelu S. and Drisdel, Renaldo C. and Meckler, Xavier and Gong, Ping and Leem, Jae Yoon Y. and Li, Tong and Carter, Meghan and Chen, Ying and Nguyen, Phuong and Iwatsubo, Takeshi and Tomita, Taisuke and Wong, Philip C. and Green, William N. and Kounnas, Maria Z. and Thinakaran, Gopal

S-palmitoylation of gamma-secretase subunits nicastrin and APH-1.

The Journal of biological chemistry, Jan, 2009 (LINK)

Tomita, Taisuke

Peptides inhibiting specific cleaving activities of presenilins

Expert Opinion on Therapeutic Patents, Sep, 2008 (LINK)

Yamagishi, Hiroaki and Matsumoto, Koji and Iwasaki, Kotaro and Miyazaki, Tohru and Yokoshima, Satoshi and Tokuyama, Hidetoshi and Fukuyama, Tohru

Synthesis of eudistomin C and E: improved preparation of the indole unit.

Organic letters, Jun, 2008 (LINK)

Cheung, King-Ho H. and Shineman, Diana and Müller, Marioly and Cárdenas, César and Mei, Lijuan and Yang, Jun and Tomita, Taisuke and Iwatsubo, Takeshi and Lee, Virginia M-Y M. and Foskett, J. Kevin

Mechanism of Ca2+ disruption in Alzheimer's disease by presenilin regulation of InsP3 receptor channel gating.

Neuron, Jun, 2008 (LINK)

Sato, Chihiro and Takagi, Shizuka and Tomita, Taisuke and Iwatsubo, Takeshi

The C-terminal PAL motif and transmembrane domain 9 of presenilin 1 are involved in the formation of the catalytic pore of the gamma-secretase.

The Journal of neuroscience : the official journal of the Society for Neuroscience, Jun, 2008 (LINK)

Tomita, Taisuke

At the frontline of Alzheimer's disease treatment: gamma-secretase inhibitor/modulator mechanism.

Naunyn-Schmiedeberg's archives of pharmacology, Jun, 2008 (LINK)

MPA5: 12articles(top)

Tomitsuka, Eriko and Kita, Kiyoshi and Esumi, Hiroyasu

Regulation of succinate-ubiquinone reductase and fumarate reductase activities in human complex II by phosphorylation of its flavoprotein subunit.

Proceedings of the Japan Academy. Series B, Physical and biological sciences, 2009 (LINK)

Inaoka, Daniel Ken K. and Sakamoto, Kimitoshi and Shimizu, Hironari and Shiba, Tomoo and Kurisu, Genji and Nara, Takeshi and Aoki, Takashi and Kita, Kiyoshi and Harada, Shigeharu

Structures of Trypanosoma cruzi dihydroorotate dehydrogenase complexed with substrates and products: atomic resolution insights into mechanisms of dihydroorotate oxidation and fumarate reduction.

Biochemistry, Oct, 2008 (LINK)

Mogi, Tatsushi and Kawakami, Takuro and Arai, Hiroyuki and Igarashi, Yasuo and Matsushita, Kazunobu and Mori, Mihoko and Shiomi, Kazuro and Omura, Satoshi and Harada, Shigeharu and Kita, Kiyoshi

Siccanin rediscovered as a species-selective succinate dehydrogenase inhibitor.

Journal of biochemistry, Sep, 2009 (LINK)

Mita, Toshihiro and Tanabe, Kazuyuki and Kita, Kiyoshi

Spread and evolution of Plasmodium falciparum drug resistance.

Parasitology international, Sep, 2009 (LINK)

Morales, Jorge and Mogi, Tatsushi and Mineki, Shigeru and Takashima, Eizo and Mineki, Reiko and Hirawake, Hiroko and Sakamoto, Kimitoshi and Omura, Satoshi and Kita, Kiyoshi

Novel mitochondrial complex II isolated from Trypanosoma cruzi is composed of 12 peptides including a heterodimeric Ip subunit.

The Journal of biological chemistry, Mar, 2009 (LINK)

Kawahara, Kenji and Mogi, Tatsushi and Tanaka, Takeshi Q. and Hata, Masayuki and Miyoshi, Hideto and Kita, Kiyoshi

Mitochondrial dehydrogenases in the aerobic respiratory chain of the rodent malaria parasite Plasmodium yoelii yoelii.

Journal of biochemistry, Feb, 2009 (LINK)

Mogi, Tatsushi and Ui, Hideaki and Shiomi, Kazuro and Omura, Satoshi and Miyoshi, Hideto and Kita, Kiyoshi

Antibiotics LL-Z1272 identified as novel inhibitors discriminating bacterial and mitochondrial quinol oxidases.

Biochimica et biophysica acta, Feb, 2009 (LINK)

Shimizu, Hironari and Nihei, Coh-ichi and Inaoka, Daniel Ken K. and Mogi, Tatushi and Kita, Kiyoshi and Harada, Shigeharu

Screening of detergents for solubilization, purification and crystallization of membrane proteins: a case study on succinate:ubiquinone oxidoreductase from Escherichia coli.

Acta crystallographica. Section F, Structural biology and crystallization communications, Sep, 2008 (LINK)

Siregar, Josephine E. and Syafruddin, Din and Matsuoka, Hiroyuki and Kita, Kiyoshi and Marzuki, Sangkot

Mutation underlying resistance of Plasmodium berghei to atovaquone in the quinone binding domain 2 (Qo(2)) of the cytochrome b gene.

Parasitology international, Jun, 2008 (LINK)

Moore, Anthony L. and Carré, Jane E. and Affourtit, Charles and Albury, Mary S. and Crichton, Paul G. and Kita, Kiyoshi and Heathcote, Peter

Compelling EPR evidence that the alternative oxidase is a diiron carboxylate protein.

Biochimica et biophysica acta, Apr, 2008 (LINK)

Iwata, Fumiko and Shinjyo, Noriko and Amino, Hisako and Sakamoto, Kimitoshi and Islam, M. Khyrul and Tsuji, Naotoshi and Kita, Kiyoshi

Change of subunit composition of mitochondrial complex II (succinate-ubiquinone reductase/quinol-fumarate reductase) in Ascaris suum during the migration in the experimental host.

Parasitology international, Mar, 2008 (LINK)

Matsumoto, Jun and Sakamoto, Kimitoshi and Shinjyo, Noriko and Kido, Yasutoshi and Yamamoto, Nao and Yagi, Kinpei and Miyoshi, Hideto and Nonaka, Nariaki and Katakura, Ken and Kita, Kiyoshi and Oku, Yuzaburo

Anaerobic NADH-fumarate reductase system is predominant in the respiratory chain of Echinococcus multilocularis, providing a novel target for the chemotherapy of alveolar echinococcosis.

Antimicrobial agents and chemotherapy, Jan, 2008 (LINK)

MPA6: 7articles(top)

Okazaki, Yukiko and Eto, Kazuhiro and Yamashita, Tokuyuki and Okamoto, Masayuki and Ohsugi, Mitsuru and Noda, Mitsuhiko and Terauchi, Yasuo and Ueki, Kohjiro and Kadowaki, Takashi

Decreased Insulin Secretion and Accumulation of Triglyceride in beta Cells Overexpressing a Dominant-Negative Form of AMP-Activated Protein Kinase.

Endocrine journal, Nov, 2009 (LINK)

Asano, Takeharu and Watanabe, Kiyotaka and Kubota, Naoto and Gunji, Toshiaki and Omata, Masao and Kadowaki, Takashi and Ohnishi, Shin

Adiponectin knockout mice on high fat diet develop fibrosing steatohepatitis.

Journal of gastroenterology and hepatology, Oct, 2009 (LINK)

岡本士毅 and 箕越靖彦

AMPKと摂食調節

最新医学, Oct, 2008

Kadowaki, Takashi

Adiponekuchin to sono juyotai : Koseikatsu shukanbyo horumon no zenbo, 2008 (LINK)

Otani, Kensuke and Kitayama, Joji and Yasuda, Koji and Nio, Yasunori and Iwabu, Masato and Okudaira, Shinichi and Aoki, Junken and Yamauchi, Toshimasa and Kadowaki, Takashi and Nagawa, Hirokazu

Adiponectin suppresses tumorigenesis in Apc(Min)(/+) mice.

Cancer letters, Jul, 2009 (LINK)

Awazawa, Motoharu and Ueki, Kohjiro and Inabe, Kazunori and Yamauchi, Toshimasa and Kaneko, Kazuma and Okazaki, Yukiko and Bardeesy, Nabeel and Ohnishi, Shin and Nagai, Ryozo and Kadowaki, Takashi

Adiponectin suppresses hepatic SREBP1c expression in an AdipoR1/LKB1/AMPK dependent pathway.

Biochemical and biophysical research communications, Apr, 2009 (LINK)

Minokoshi, Yasuhiko and Shiuchi, Tetsuya and Lee, Suni and Suzuki, Atsushi and Okamoto, Shiki

Role of hypothalamic AMP-kinase in food intake regulation.

Nutrition (Burbank, Los Angeles County, Calif.), Sep, 2008 (LINK)

MPB1: 8articles(top)

Toda, Etsuko and Terashima, Yuya and Sato, Tsuyoshi and Hirose, Kenzo and Kanegasaki, Shiro and Matsushima, Kouji

FROUNT Is a Common Regulator of CCR2 and CCR5 Signaling to Control Directional Migration.

Journal of immunology (Baltimore, Md. : 1950), Oct, 2009 (LINK)

Kofuku, Yutaka and Yoshiura, Chie and Ueda, Takumi and Terasawa, Hiroaki and Hirai, Takahiro and Tominaga, Sae and Hirose, Masako and Maeda, Yoshitake and Takahashi, Hideo and Terashima, Yuya and Matsushima, Kouji and Shimada, Ichio

Structural basis of the interaction between chemokine stromal cell-derived factor-1/CXCL12 and its G-protein-coupled receptor CXCR4.

The Journal of biological chemistry, Oct, 2009 (LINK)

Shimaoka, Takeshi and Seino, Ken-ichiro and Kume, Noriaki and Minami, Manabu and Nishime, Chiyoko and Suematsu, Makoto and Kita, Toru and Taniguchi, Masaru and Matsushima, Kouji and Yonehara, Shin

Critical role for CXC chemokine ligand 16 (SR-PSOX) in Th1 response mediated by NKT cells.

Journal of immunology (Baltimore, Md. : 1950), Dec, 2007 (LINK)

Ueha, Satoshi and Yoneyama, Hiroyuki and Hontsu, Shigeto and Kurachi, Makoto and Kitabatake, Masahiro and Abe, Jun and Yoshie, Osamu and Shibayama, Shiro and Sugiyama, Tetsuya and Matsushima, Kouji

CCR7 mediates the migration of Foxp3+ regulatory T cells to the paracortical areas of peripheral lymph nodes through high endothelial venules.

Journal of leukocyte biology, Nov, 2007 (LINK)

Sasaki, Shin and Mello, Cecilia C. and Shimada, Atsuko and Nakatani, Yoichiro and Hashimoto, Shin-ichi and Ogawa, Masako and Matsushima, Kouji and Gu, Sam G. and Kasahara, Masahiro and Ahsan, Budrul and Sasaki, Atsushi and Saito, Taro and Suzuki, Yutaka and Sugano, Sumio and Kohara, Yuji and Takeda, Hiroyuki and Fire, Andrew and Morishita, Shinichi

Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites

Science, Jan, 2009 (LINK)

Hashimoto, Shin-ichi and Qu, Wei and Ahsan, Budrul and Ogoshi, Katsumi and Sasaki, Atsushi and Nakatani, Yoichiro and Lee, Yongjun and Ogawa, Masako and Ametani, Akio and Suzuki, Yutaka and Sugano, Sumio and Lee, Clarence C. and Nutter, Robert C. and Morishita, Shinichi and Matsushima, Kouji

High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer

PLoS ONE, Jan, 2009 (LINK)

Shawkat, Samia and Karima, Risuke and Tojo, Tadashi and Tadakuma, Hisashi and Saitoh, Shin-Ichiroh and Akashi-Takamura, Sachiko and Miyake, Kensuke and Funatsu, Takashi and Matsushima, Kouji

Visualization of the molecular dynamics of lipopolysaccharide on the plasma membrane of murine macrophages by total internal reflection fluorescence microscopy.

The Journal of biological chemistry, Aug, 2008 (LINK)

Sawanobori, Yasushi and Ueha, Satoshi and Kurachi, Makoto and Shimaoka, Takeshi and Talmadge, James E. and Abe, Jun and Shono, Yusuke and Kitabatake, Masahiro and Kakimi, Kazuhiro and Mukaida, Naofumi and Matsushima, Kouji

Chemokine-mediated rapid turnover of myeloid-derived suppressor cells in tumor-bearing mice.

Blood, Jun, 2008 (LINK)

MPB2: 9articles(top)

Kasuga, Jun-Ichi and Oyama, Takuji and Nakagome, Izumi and Makishima, Makoto and Hirono, Shuichi and Morikawa, Kosuke and Hashimoto, Yuichi and Miyachi, Hiroyuki

Determination of the critical amino acids involved in the peroxisome proliferator-activated receptor (PPAR) delta selectivity of phenylpropanoic acid-derived agonists.

ChemMedChem, Nov, 2008 (LINK)

Ema, Masatsugu and Mori, Daisuke and Niwa, Hitoshi and Hasegawa, Yoshikazu and Yamanaka, Yojiro and Hitoshi, Seiji and Mimura, Junsei and Kawabe, Yoh-ichi and Hosoya, Tomohiro and Morita, Masanobu and Shimosato, Daisuke and Uchida, Kazuhiko and Suzuki, Norio and Yanagisawa, Jun and Sogawa, Kazuhiro and Rossant, Janet and Yamamoto, Masayuki and Takahashi, Satoru and Fujii-Kuriyama, Yoshiaki

Krüppel-like factor 5 is essential for blastocyst development and the normal self-renewal of mouse ESCs.

Cell stem cell, Nov, 2008 (LINK)

Kagami, S. and Ohkido, I. and Yokoyama, K. and Shigematsu, T. and Hosoya, T.

Osteoprotegerin affects the responsiveness of fibroblast growth factor-23 to high oral phosphate intake.

Clinical nephrology, Oct, 2008 (LINK)

Oyama, Takuji and Toyota, Kenji and Waku, Tsuyoshi and Hirakawa, Yuko and Nagasawa, Naoko and Kasuga, Jun Ichi I. and Hashimoto, Yuichi and Miyachi, Hiroyuki and Morikawa, Kosuke

Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures.

Acta crystallographica. Section D, Biological crystallography, Aug, 2009 (LINK)

Akaogi, K. and Nakajima, Y. and Ito, I. and Kawasaki, S. and Oie, S-h and Murayama, A. and Kimura, K. and Yanagisawa, J.

KLF4 suppresses estrogen-dependent breast cancer growth by inhibiting the transcriptional activity of ER|[alpha]|

Oncogene, Jun, 2009 (LINK)

藤原敏道

固体NMR分光法による生体分子複合体の構造解析

日本物理学会誌, Mar, 2009

Kajiro, Masashi and Hirota, Ryuichi and Nakajima, Yuka and Kawanowa, Kaori and So-ma, Kae and Ito, Ichiaki and Yamaguchi, Yuri and Ohie, Sho-hei H. and Kobayashi, Yasuhito and Seino, Yuko and Kawano, Miwako and Kawabe, Yoh-ichi and Takei, Hiroyuki and Hayashi, Shin-ichi and Kurosumi, Masafumi and Murayama, Akiko and Kimura, Keiji and Yanagisawa, Junn

The ubiquitin ligase CHIP acts as an upstream regulator of oncogenic pathways.

Nature cell biology, Mar, 2009 (LINK)

Komatsu, Yoko and Ito, Ichiaki and Wayama, Mitsutoshi and Fujimura, Akiko and Akaogi, Kensuke and Machida, Hikaru and Nakajima, Yuka and Kuroda, Takao and Ohmori, Kazuji and Murayama, Akiko and Kimura, Keiji and Yanagisawa, Junn

PPARgamma ligands suppress the feedback loop between E2F2 and cyclin-E1.

Biochemical and biophysical research communications, May, 2008 (LINK)

阿久津秀雄

NMRをとおして生命のしくみを探る

蛋白質拡散酵素, Jul, 2007

MPB3: 13articles(top)

Inoue, Makoto and Ma, Lin and Aoki, Junken and Ueda, Hiroshi

Simultaneous stimulation of spinal NK1 and NMDA receptors produces LPC which undergoes ATX-mediated conversion to LPA, an initiator of neuropathic pain.

Journal of neurochemistry, Dec, 2008 (LINK)

Nakamura, Kazuhiro and Nangaku, Masaomi and Ohkawa, Ryunosuke and Okubo, Shigeo and Yokota, Hiromitsu and Ikeda, Hitoshi and Aoki, Junken and Yatomi, Yutaka

Analysis of serum and urinary lysophospholipase D/autotaxin in nephrotic syndrome.

Clinical chemistry and laboratory medicine : CCLM / FESCC, 2008 (LINK)

Yamashita, Masami and Higashi, Tomohito and Suetsugu, Shiro and Sato, Yusuke and Ikeda, Tomoyuki and Shirakawa, Ryutaro and Kita, Toru and Takenawa, Tadaomi and Horiuchi, Hisanori and Fukai, Shuya and Nureki, Osamu

Crystal structure of human DAAM1 formin homology 2 domain.

Genes to cells : devoted to molecular & cellular mechanisms, Nov, 2007 (LINK)

Endo, Tomoko and Kano, Kuniyuki and Motoki, Rie and Hama, Kotaro and Okudaira, Shinichi and Ishida, Mayuko and Ogiso, Hideo and Tanaka, Masayuki and Matsuki, Norio and Taguchi, Ryo and Kanai, Motomu and Shibasaki, Masakatsu and Arai, Hiroyuki and Aoki, Junken

Lysophosphatidylmethanol is a pan lysophosphatidic acid receptor agonist and is produced by autotaxin in blood.

Journal of biochemistry, Aug, 2009 (LINK)

Makide, Kumiko and Kitamura, Hajime and Sato, Yusuke and Okutani, Michiyo and Aoki, Junken

Emerging lysophospholipid mediators, lysophosphatidylserine, lysophosphatidylthreonine, lysophosphatidylethanolamine and lysophosphatidylglycerol.

Prostaglandins & other lipid mediators, May, 2009 (LINK)

Masuda, Akiko and Nakamura, Kazuhiro and Izutsu, Koji and Igarashi, Koji and Ohkawa, Ryunosuke and Jona, Masahiro and Higashi, Katsumi and Yokota, Hiromitsu and Okudaira, Shinichi and Kishimoto, Tatsuya and Watanabe, Takuro and Koike, Yukako and Ikeda, Hitoshi and Kozai, Yasushi and Kurokawa, Mineo and Aoki, Junken and Yatomi, Yutaka

Serum autotaxin measurement in haematological malignancies: a promising marker for follicular lymphoma.

British journal of haematology, Sep, 2008 (LINK)

Kanamori, Takahiro and Inoue, Takao and Sakamoto, Taro and Gengyo-Ando, Keiko and Tsujimoto, Masafumi and Mitani, Shohei and Sawa, Hitoshi and Aoki, Junken and Arai, Hiroyuki

Beta-catenin asymmetry is regulated by PLA1 and retrograde traffic in C. elegans stem cell divisions.

The EMBO journal, Jun, 2008 (LINK)

Higashi, Tomohito and Ikeda, Tomoyuki and Shirakawa, Ryutaro and Kondo, Hirokazu and Kawato, Mitsunori and Horiguchi, Masahito and Okuda, Tomohiko and Okawa, Katsuya and Fukai, Shuya and Nureki, Osamu and Kita, Toru and Horiuchi, Hisanori

Biochemical characterization of the Rho GTPase-regulated actin assembly by diaphanous-related formins, mDia1 and Daam1, in platelets.

The Journal of biological chemistry, Mar, 2008 (LINK)

Nakamura, Kazuhiro and Igarashi, Koji and Ide, Kazufumi and Ohkawa, Ryunosuke and Okubo, Shigeo and Yokota, Hiromitsu and Masuda, Akiko and Oshima, Noriko and Takeuchi, Takumi and Nangaku, Masaomi and Okudaira, Shinichi and Arai, Hiroyuki and Ikeda, Hitoshi and Aoki, Junken and Yatomi, Yutaka

Validation of an autotaxin enzyme immunoassay in human serum samples and its application to hypoalbuminemia differentiation.

Clinica chimica acta; international journal of clinical chemistry, Feb, 2008 (LINK)

Kawato, Mitsunori and Shirakawa, Ryutaro and Kondo, Hirokazu and Higashi, Tomohito and Ikeda, Tomoyuki and Okawa, Katsuya and Fukai, Shuya and Nureki, Osamu and Kita, Toru and Horiuchi, Hisanori

Regulation of platelet dense granule secretion by the Ral GTPase-exocyst pathway.

The Journal of biological chemistry, Jan, 2008 (LINK)

Watanabe, Naoko and Ikeda, Hitoshi and Nakamura, Kazuhiro and Ohkawa, Ryunosuke and Kume, Yukio and Tomiya, Tomoaki and Tejima, Kazuaki and Nishikawa, Takako and Arai, Masahiro and Yanase, Mikio and Aoki, Junken and Arai, Hiroyuki and Omata, Masao and Fujiwara, Kenji and Yatomi, Yutaka

Plasma lysophosphatidic acid level and serum autotaxin activity are increased in liver injury in rats in relation to its severity.

Life sciences, Sep, 2007 (LINK)

Hattori, Motoyuki and Tanaka, Yoshiki and Fukai, Shuya and Ishitani, Ryuichiro and Nureki, Osamu

Crystal structure of the MgtE Mg2+ transporter.

Nature, Aug, 2007 (LINK)

Sato, Yusuke and Fukai, Shuya and Nureki, Osamu

Crystallization and crystallographic analysis of yeast Sec2p, a guanine nucleotide-exchange factor for the yeast Rab GTPase Sec4p.

Acta crystallographica. Section F, Structural biology and crystallization communications, Jul, 2007 (LINK)

MPB4: 16articles(top)

Okuno, Tatsusada and Nakatsuji, Yuji and Moriya, Masayuki and Takamatsu, Hyota and Nojima, Satoshi and Takegahara, Noriko and Toyofuku, Toshihiko and Nakagawa, Yukinobu and Kang, Sujin and Friedel, Roland H. and Sakoda, Saburo and Kikutani, Hitoshi and Kumanogoh, Atsushi

Roles of Sema4D-Plexin-B1 Interactions in the Central Nervous System for Pathogenesis of Experimental Autoimmune Encephalomyelitis.

Journal of immunology (Baltimore, Md. : 1950), Dec, 2009 (LINK)

Nakamura, Fumio and Ugajin, Kozue and Yamashita, Naoya and Okada, Takako and Uchida, Yutaka and Taniguchi, Masahiko and Ohshima, Toshio and Goshima, Yoshio

Increased proximal bifurcation of CA1 pyramidal apical dendrites in sema3A mutant mice.

The Journal of comparative neurology, Oct, 2009 (LINK)

Yamaguchi, Junko and Nakamura, Fumio and Aihara, Michiko and Yamashita, Naoya and Usui, Hiroshi and Hida, Tomonobu and Takei, Kohtaro and Nagashima, Yoji and Ikezawa, Zenro and Goshima, Yoshio

Semaphorin3A alleviates skin lesions and scratching behavior in NC/Nga mice, an atopic dermatitis model.

The Journal of investigative dermatology, Dec, 2008 (LINK)

Matsui, Chiyuki and Kaieda, Shuji and Ikegami, Takahisa and Mimori-Kiyosue, Yuko

Identification of a link between the SAMP repeats of adenomatous polyposis coli tumor suppressor and the Src homology 3 domain of DDEF.

The Journal of biological chemistry, Nov, 2008 (LINK)

Makino, Nobuhiko and Toyofuku, Toshihiko and Takegahara, Noriko and Takamatsu, Hyota and Okuno, Tatsusada and Nakagawa, Yukinobu and Kang, Sujin and Nojima, Satoshi and Hori, Masatsugu and Kikutani, Hitoshi and Kumanogoh, Atsushi

Involvement of Sema4A in the progression of experimental autoimmune myocarditis.

FEBS letters, Nov, 2008 (LINK)

Takamatsu, Hyota and Okuno, Tatsusada and Kumanogoh, Atsushi

Regulation of immune cell responses by semaphorins and their receptors.

Cellular & molecular immunology, Feb, 2010 (LINK)

Uchida, Yutaka and Ohshima, Toshio and Yamashita, Naoya and Ogawara, Miyuki and Sasaki, Yukio and Nakamura, Fumio and Goshima, Yoshio

Semaphorin3A signaling mediated by Fyn-dependent tyrosine phosphorylation of collapsin response mediator protein 2 at tyrosine 32.

The Journal of biological chemistry, Aug, 2009 (LINK)

Fuchikawa, Taro and Nakamura, Fumio and Fukuda, Nana and Takei, Kohtaro and Goshima, Yoshio

Protein tyrosine phosphatase SHP2 is involved in Semaphorin 4D-induced axon repulsion.

Biochemical and biophysical research communications, Jul, 2009 (LINK)

Yukawa, Kazunori and Tanaka, Tetsuji and Takeuchi, Noriko and Iso, Hiroyuki and Li, Li and Kohsaka, Akira and Waki, Hidefumi and Miyajima, Masayasu and Maeda, Masanobu and Kikutani, Hitoshi and Kumanogoh, Atsushi

Sema4D/CD100 deficiency leads to superior performance in mouse motor behavior.

The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques, May, 2009 (LINK)

Inui, Masanori and Kikuchi, Yuki and Aoki, Naoko and Endo, Shota and Maeda, Tsutomu and Sugahara-Tobinai, Akiko and Fujimura, Shion and Nakamura, Akira and Kumanogoh, Atsushi and Colonna, Marco and Takai, Toshiyuki

Signal adaptor DAP10 associates with MDL-1 and triggers osteoclastogenesis in cooperation with DAP12.

Proceedings of the National Academy of Sciences of the United States of America, Mar, 2009 (LINK)

Toyofuku, Toshihiko and Yoshida, Junko and Sugimoto, Tamiko and Yamamoto, Midori and Makino, Nobuhiko and Takamatsu, Hyota and Takegahara, Noriko and Suto, Fumikazu and Hori, Masatsugu and Fujisawa, Hajime and Kumanogoh, Atsushi and Kikutani, Hitoshi

Repulsive and attractive semaphorins cooperate to direct the navigation of cardiac neural crest cells.

Developmental biology, Sep, 2008 (LINK)

Sierra, Jose Rafael R. and Corso, Simona and Caione, Luisa and Cepero, Virna and Conrotto, Paolo and Cignetti, Alessandro and Piacibello, Wanda and Kumanogoh, Atsushi and Kikutani, Hitoshi and Comoglio, Paolo Maria M. and Tamagnone, Luca and Giordano, Silvia

Tumor angiogenesis and progression are enhanced by Sema4D produced by tumor-associated macrophages.

The Journal of experimental medicine, Jul, 2008 (LINK)

Togashi, Kazunobu and von Schimmelmann, Melanie J. and Nishiyama, Makoto and Lim, Chae-Seok S. and Yoshida, Norihiro and Yun, Bokyoung and Molday, Robert S. and Goshima, Yoshio and Hong, Kyonsoo

Cyclic GMP-gated CNG channels function in Sema3A-induced growth cone repulsion.

Neuron, Jun, 2008 (LINK)

Mizui, Masayuki and Shikina, Takashi and Arase, Hisashi and Suzuki, Kazuhiro and Yasui, Teruhito and Rennert, Paul D. and Kumanogoh, Atsushi and Kikutani, Hitoshi

Bimodal regulation of T cell-mediated immune responses by TIM-4.

International immunology, May, 2008 (LINK)

Yamamoto, Midori and Suzuki, Kazuhiro and Okuno, Tatsusada and Ogata, Takehiro and Takegahara, Noriko and Takamatsu, Hyota and Mizui, Masayuki and Taniguchi, Masahiko and Chédotal, Alain and Suto, Fumikazu and Fujisawa, Hajime and Kumanogoh, Atsushi and Kikutani, Hitoshi

Plexin-A4 negatively regulates T lymphocyte responses.

International immunology, Mar, 2008 (LINK)

Suzuki, Kazuhiro and Kumanogoh, Atsushi and Kikutani, Hitoshi

Semaphorins and their receptors in immune cell interactions.

Nature immunology, Jan, 2008 (LINK)

Food/Environment

FEA1: 10articles(top)

Takeshi, Kawai and Arisa, Sugisaka and Joe, Hull J. and Shogo, Matsumoto and Koji, Nagata and Masaru, Tanokura and Hiromichi, Nagasawa

Development of a novel bioassay system for pheromone biosynthesis-activating neuropeptide (PBAN) using the Bombyx PBAN receptor expressed in insect cells

Peptide Science, 2009

Akitoshi, Okada and Takeshi, Kawai and Arisa, Sugisaka and Jun, Ohtsuka and Joe, Hull J. and Ken-ichi, Moto and Shogo, Matsumoto and Hiromichi, Nagasawa and Koji, Nagata and Masaru, Tanokura

Structural analysis of the active and inactive fragments of pheromone biosynthesis-activating neuropeptide (PBAN) from the silkmoth Bombyx mori

Peptide Science, 2009

松本正吾

神経ホルモンPBANが支配するカイコガ性フェロモン産生の分子機構

化学と生物, 2008

Nagata, K. and Okada, A. and Takahashi, M. and Kawai, T. and Sugisaka, A. and Hull, J. J. and Moto, K. and Matsumoto, S. and Nagasawa, H. and Tanokura, M.

NMR solution structure analysis of the active and inactive fragments of pheromone biosynthesis-activating neuropeptide (PBAN) from the silkmoth Bombyx mori

Peptide Science, 2008

Matsumoto, Shogo and Ohnishi, Atsushi and Moto, Ken-ichi and Hull, Joe J.

[Mating behavior and pheromone production in moths]

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Oct, 2007 (LINK)

Matsumoto, Shogo

Molecular Mechanisms Underlying Sex Pheromone Production in Moths.

Bioscience, biotechnology, and biochemistry, Feb, 2010 (LINK)

Matsumoto, Shogo and Hull, Joe J. and Ohnishi, Atsushi

Molecular mechanisms underlying PBAN signaling in the silkmoth Bombyx mori.

Annals of the New York Academy of Sciences, Apr, 2009 (LINK)

Ohnishi, Atsushi and Hashimoto, Kana and Imai, Kiyohiro and Matsumoto, Shogo

Functional characterization of the Bombyx mori fatty acid transport protein (BmFATP) within the silkmoth pheromone gland.

The Journal of biological chemistry, Feb, 2009 (LINK)

Antony, Binu and Fujii, Takeshi and Moto, Ken'ichi and Matsumoto, Shogo and Fukuzawa, Mai and Nakano, Ryo and Tatsuki, Sadahiro and Ishikawa, Yukio

Pheromone-gland-specific fatty-acyl reductase in the adzuki bean borer, Ostrinia scapulalis (Lepidoptera: Crambidae).

Insect biochemistry and molecular biology, Feb, 2009 (LINK)

Hull, Joe J. and Kajigaya, Ryosuke and Imai, Kiyohiro and Matsumoto, Shogo

Sex pheromone production in the silkworm, Bombyx mori, is mediated by store-operated Ca2+ channels.

Bioscience, biotechnology, and biochemistry, Aug, 2007 (LINK)

FEA2: 11articles(top)

Horinouchi, Sueharu

Combinatorial biosynthesis of non-bacterial and unnatural flavonoids, stilbenoids and curcuminoids by microorganisms.

The Journal of antibiotics, Dec, 2008 (LINK)

Katsuyama, Yohei and Matsuzawa, Miku and Funa, Nobutaka and Horinouchi, Sueharu

In vitro synthesis of curcuminoids by type III polyketide synthase from Oryza sativa.

The Journal of biological chemistry, Dec, 2007 (LINK)

Akanuma, Genki and Hara, Hirofumi and Ohnishi, Yasuo and Horinouchi, Sueharu

Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus.

Molecular microbiology, Sep, 2009 (LINK)

Tezuka, Takeaki and Hara, Hirofumi and Ohnishi, Yasuo and Horinouchi, Sueharu

Identification and gene disruption of small noncoding RNAs in Streptomyces griseus.

Journal of bacteriology, Aug, 2009 (LINK)

Nakano, Chiaki and Ozawa, Hiroki and Akanuma, Genki and Funa, Nobutaka and Horinouchi, Sueharu

Biosynthesis of aliphatic polyketides by type III polyketide synthase and methyltransferase in Bacillus subtilis.

Journal of bacteriology, Aug, 2009 (LINK)

Hara, Hirofumi and Ohnishi, Yasuo and Horinouchi, Sueharu

DNA microarray analysis of global gene regulation by A-factor in Streptomyces griseus

Microbiology, Jul, 2009 (LINK)

Katsuyama, Yohei and Kita, Tomoko and Horinouchi, Sueharu

Identification and characterization of multiple curcumin synthases from the herb Curcuma longa.

FEBS letters, Jul, 2009 (LINK)

Awakawa, Takayoshi and Yokota, Kosuke and Funa, Nobutaka and Doi, Fuminao and Mori, Naoki and Watanabe, Hidenori and Horinouchi, Sueharu

Physically discrete beta-lactamase-type thioesterase catalyzes product release in atrochrysone synthesis by iterative type I polyketide synthase.

Chemistry & biology, Jun, 2009 (LINK)

Horinouchi, Sueharu

Combinatorial biosynthesis of plant medicinal polyketides by microorganisms.

Current opinion in chemical biology, Apr, 2009 (LINK)

Katsuyama, Yohei and Kita, Tomoko and Funa, Nobutaka and Horinouchi, Sueharu

Curcuminoid biosynthesis by two type III polyketide synthases in the herb Curcuma longa.

The Journal of biological chemistry, Apr, 2009 (LINK)

Ohnishi, Yasuo and Ishikawa, Jun and Hara, Hirofumi and Suzuki, Hirokazu and Ikenoya, Miwa and Ikeda, Haruo and Yamashita, Atsushi and Hattori, Masahira and Horinouchi, Sueharu

Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Journal of bacteriology, Jun, 2008 (LINK)

FEA3: 19articles(top)

Miyazono, Ken-Ichi I. and Miyakawa, Takuya and Sawano, Yoriko and Kubota, Keiko and Kang, Hee-Jin J. and Asano, Atsuko and Miyauchi, Yumiko and Takahashi, Mihoko and Zhi, Yuehua and Fujita, Yasunari and Yoshida, Takuya and Kodaira, Kensuke and Yamaguchi-Shinozaki, Kazuko and Tanokura, Masaru

Structural basis of abscisic acid signalling.

Nature, Dec, 2009 (LINK)

Yoshida, Takuya and Fujita, Yasunari and Sayama, Hiroko and Maruyama, Kyonoshin and Mizoi, Junya and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation.

The Plant journal : for cell and molecular biology, Nov, 2009 (LINK)

Fujita, Yasunari and Nakashima, Kazuo and Yoshida, Takuya and Katagiri, Takeshi and Kidokoro, Satoshi and Kanamori, Norihito and Umezawa, Taishi and Fujita, Miki and Maruyama, Kyonoshin and Ishiyama, Kanako and Kobayashi, Masatomo and Nakasone, Shoko and Yamada, Kohji and Ito, Takuya and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Three SnRK2 Protein Kinases are the Main Positive Regulators of Abscisic Acid Signaling in Response to Water Stress in Arabidopsis.

Plant & cell physiology, Oct, 2009 (LINK)

Kidokoro, Satoshi and Maruyama, Kyonoshin and Nakashima, Kazuo and Imura, Yoshiyuki and Narusaka, Yoshihiro and Shinwari, Zabta K. and Osakabe, Yuriko and Fujita, Yasunari and Mizoi, Junya and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

The Phytochrome-Interacting Factor PIF7 Negatively Regulates DREB1 Expression under Circadian Control in Arabidopsis.

Plant physiology, Oct, 2009 (LINK)

International Symposium on the Molecular Breeding of Forage and Turf and Yamada, Toshihiko and Spangenberg, G.

Molecular breeding of forage and turf : the proceedings of the 5th International Symposium on the Molecular Breeding of Forage and Turf, 2009 (LINK)

Sawano, Yoriko and Hatano, Ken-ichi and Miyakawa, Takuya and Tanokura, Masaru

Absolute side-chain structure at position 13 is required for the inhibitory activity of bromein.

The Journal of biological chemistry, Dec, 2008 (LINK)

Umezawa, Taishi and Sakurai, Tetsuya and Totoki, Yasushi and Toyoda, Atsushi and Seki, Motoaki and Ishiwata, Atsushi and Akiyama, Kenji and Kurotani, Atsushi and Yoshida, Takuhiro and Mochida, Keiichi and Kasuga, Mie and Todaka, Daisuke and Maruyama, Kyonoshin and Nakashima, Kazuo and Enju, Akiko and Mizukado, Saho and Ahmed, Selina and Yoshiwara, Kyoko and Harada, Kyuya and Tsubokura, Yasutaka and Hayashi, Masaki and Sato, Shusei and Anai, Toyoaki and Ishimoto, Masao and Funatsuki, Hideyuki and Teraishi, Masayoshi and Osaki, Mitsuru and Shinano, Takuro and Akashi, Ryo and Sakaki, Yoshiyuki and Yamaguchi-Shinozaki, Kazuko and Shinozaki, Kazuo

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

DNA research : an international journal for rapid publication of reports on genes and genomes, Dec, 2008 (LINK)

Tran, Lam-Son Phan S. and Urao, Takeshi and Qin, Feng and Maruyama, Kyonoshin and Kakimoto, Tatsuo and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America, Dec, 2007 (LINK)

Takeshita, Daijiro and Zenno, Shuhei and Lee, Woo Cheol C. and Nagata, Koji and Saigo, Kaoru and Tanokura, Masaru

Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human dicer.

Journal of molecular biology, Nov, 2007 (LINK)

Tran, Lam-Son Phan S. and Nakashima, Kazuo and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Plant gene networks in osmotic stress response: from genes to regulatory networks.

Methods in enzymology, 2007 (LINK)

Osakabe, Yuriko and Mizuno, Shinji and Tanaka, Hidenori and Maruyama, Kyonoshin and Osakabe, Keishi and Todaka, Daisuke and Fujita, Yasunari and Kobayashi, Masatomo and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Overproduction of the membrane-bound receptor-like protein kinase1, RPK1, enhances abiotic stress tolerance in Arabidopsis.

The Journal of biological chemistry, Jan, 2010 (LINK)

Matsukura, Satoko and Mizoi, Junya and Yoshida, Takumi and Todaka, Daisuke and Ito, Yusuke and Maruyama, Kyonoshin and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.

Molecular genetics and genomics : MGG, Jan, 2010 (LINK)

Nakashima, Kazuo and Fujita, Yasunari and Kanamori, Norihito and Katagiri, Takeshi and Umezawa, Taishi and Kidokoro, Satoshi and Maruyama, Kyonoshin and Yoshida, Takuya and Ishiyama, Kanako and Kobayashi, Masatomo and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Three Arabidopsis SnRK2 Protein Kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, Involved in ABA Signaling are Essential for the Control of Seed Development and Dormancy

Plant Cell Physiol., Jul, 2009 (LINK)

Urano, Kaoru and Maruyama, Kyonoshin and Ogata, Yoshiyuki and Morishita, Yoshihiko and Takeda, Migiwa and Sakurai, Nozomu and Suzuki, Hideyuki and Saito, Kazuki and Shibata, Daisuke and Kobayashi, Masatomo and Yamaguchi-Shinozaki, Kazuko and Shinozaki, Kazuo

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics.

The Plant journal : for cell and molecular biology, Mar, 2009 (LINK)

Nakashima, Kazuo and Ito, Yusuke and Yamaguchi-Shinozaki, Kazuko

Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses.

Plant physiology, Jan, 2009 (LINK)

Qin, Feng and Sakuma, Yoh and Tran, Lam-Son Phan S. and Maruyama, Kyonoshin and Kidokoro, Satoshi and Fujita, Yasunari and Fujita, Miki and Umezawa, Taishi and Sawano, Yoriko and Miyazono, Ken-Ichi and Tanokura, Masaru and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression.

The Plant cell, Jun, 2008 (LINK)

Sawano, Yoriko and Hatano, Ken-ichi and Miyakawa, Takuya and Komagata, Hideki and Miyauchi, Yumiko and Yamazaki, Hiroshi and Tanokura, Masaru

Proteinase inhibitor from ginkgo seeds is a member of the plant nonspecific lipid transfer protein gene family.

Plant physiology, Apr, 2008 (LINK)

Ogasawara, Yoko and Kaya, Hidetaka and Hiraoka, Goro and Yumoto, Fumiaki and Kimura, Sachie and Kadota, Yasuhiro and Hishinuma, Haruka and Senzaki, Eriko and Yamagoe, Satoshi and Nagata, Koji and Nara, Masayuki and Suzuki, Kazuo and Tanokura, Masaru and Kuchitsu, Kazuyuki

Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation.

The Journal of biological chemistry, Apr, 2008 (LINK)

Yoshida, Takumi and Sakuma, Yoh and Todaka, Daisuke and Maruyama, Kyonoshin and Qin, Feng and Mizoi, Junya and Kidokoro, Satoshi and Fujita, Yasunari and Shinozaki, Kazuo and Yamaguchi-Shinozaki, Kazuko

Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system.

Biochemical and biophysical research communications, Apr, 2008 (LINK)

FEA4: 7articles(top)

Shimada, Asako and Ueguchi-Tanaka, Miyako and Nakatsu, Toru and Nakajima, Masatoshi and Naoe, Youichi and Ohmiya, Hiroko and Kato, Hiroaki and Matsuoka, Makoto

Structural basis for gibberellin recognition by its receptor GID1.

Nature, Nov, 2008 (LINK)

Chhun, Tory and Aya, Koichiro and Asano, Kenji and Yamamoto, Eiji and Morinaka, Yoichi and Watanabe, Masao and Kitano, Hidemi and Ashikari, Motoyuki and Matsuoka, Makoto and Ueguchi-Tanaka, Miyako

Gibberellin regulates pollen viability and pollen tube growth in rice.

The Plant cell, Dec, 2007 (LINK)

Hirano, Ko and Nakajima, Masatoshi and Asano, Kenji and Nishiyama, Tomoaki and Sakakibara, Hitoshi and Kojima, Mikiko and Katoh, Etsuko and Xiang, Hongyu and Tanahashi, Takako and Hasebe, Mitsuyasu and Banks, Jo Ann A. and Ashikari, Motoyuki and Kitano, Hidemi and Ueguchi-Tanaka, Miyako and Matsuoka, Makoto

The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens.

The Plant cell, Oct, 2007 (LINK)

Aya, Koichiro and Ueguchi-Tanaka, Miyako and Kondo, Maki and Hamada, Kazuki and Yano, Kentaro and Nishimura, Mikio and Matsuoka, Makoto

Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB.

The Plant cell, May, 2009 (LINK)

Ueguchi-Tanaka, Miyako and Hirano, Ko and Hasegawa, Yasuko and Kitano, Hidemi and Matsuoka, Makoto

Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant.

The Plant cell, Sep, 2008 (LINK)

Hirano, Ko and Ueguchi-Tanaka, Miyako and Matsuoka, Makoto

GID1-mediated gibberellin signaling in plants.

Trends in plant science, Apr, 2008 (LINK)

Ueguchi-Tanaka, Miyako and Nakajima, Masatoshi and Katoh, Etsuko and Ohmiya, Hiroko and Asano, Kenji and Saji, Shoko and Hongyu, Xiang and Ashikari, Motoyuki and Kitano, Hidemi and Yamaguchi, Isomaro and Matsuoka, Makoto

Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin.

The Plant cell, Jul, 2007 (LINK)

FEA5: 11articles(top)

Yoshikawa, Hiroshi and Murai, Ryota and Maki, Syou and Kitatani, Tomoya and Sugiyama, Shigeru and Sazaki, Gen and Adachi, Hiroaki and Inoue, Tsuyoshi and Matsumura, Hiroyoshi and Takano, Kazufumi and Murakami, Satoshi and Sasaki, Takatomo and Mori, Yusuke

Laser energy dependence on femtosecond laser-induced nucleation of protein

Applied Physics A: Materials Science & Processing, Dec, 2008 (LINK)

Mima, Masashi and Kawai, Chika and Paku, Kumsun and Tomoo, Koji and Ishida, Toshimasa and Sugiyama, Shigeru and Matsumura, Hiroyoshi and Kitatani, Tomoya and Yoshikawa, Hiroshi Y. and Maki, Syou and Adachi, Hiroaki and Takano, Kazufumi and Murakami, Satoshi and Inoue, Tsuyoshi and Mori, Yusuke and Kita, Satomi and Iwamoto, Takahiro

Crystallization and preliminary X-ray crystallographic analysis of Ca2+-free primary Ca2+-sensor of Na+/Ca2+ exchanger.

Acta crystallographica. Section F, Structural biology and crystallization communications, Dec, 2008 (LINK)

Kitatani, Tomoya and Adachi, Hiroaki and Sugiyama, Shigeru and Matsumura, Hiroyoshi and Murai, Ryota and Takahashi, Yoshinori and Murakami, Satoshi and Inoue, Tsuyoshi and Mori, Yusuke and Takano, Kazufumi

Evaluation and Improvement of a Technique to Manipulate Protein Crystals in Solution

Japanese Journal of Applied Physics, Dec, 2008 (LINK)

Matsumura, Hiroyoshi and Adachi, Motoyasu and Sugiyama, Shigeru and Okada, Shino and Yamakami, Megumi and Tamada, Taro and Hidaka, Koushi and Hayashi, Yoshio and Kimura, Tooru and Kiso, Yoshiaki and Kitatani, Tomoya and Maki, Sho and Yoshikawa, Hiroshi Y. and Adachi, Hiroaki and Takano, Kazufumi and Murakami, Satoshi and Inoue, Tsuyoshi and Kuroki, Ryota and Mori, Yusuke

Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272.

Acta crystallographica. Section F, Structural biology and crystallization communications, Nov, 2008 (LINK)

Sugimura, Makoto and Maseda, Hideaki and Hanaki, Hideaki and Nakae, Taiji

Macrolide antibiotic-mediated downregulation of MexAB-OprM efflux pump expression in Pseudomonas aeruginosa.

Antimicrobial agents and chemotherapy, Nov, 2008 (LINK)

Sugiyama, Shigeru and Nomura, Yusuke and Sakamoto, Taiichi and Kitatani, Tomoya and Kobayashi, Asako and Miyakawa, Shin and Takahashi, Yoshinori and Adachi, Hiroaki and Takano, Kazufumi and Murakami, Satoshi and Inoue, Tsuyoshi and Mori, Yusuke and Nakamura, Yoshikazu and Matsumura, Hiroyoshi

Crystallization and preliminary X-ray diffraction studies of an RNA aptamer in complex with the human IgG Fc fragment.

Acta crystallographica. Section F, Structural biology and crystallization communications, Oct, 2008 (LINK)

Inaba, Kenji and Murakami, Satoshi and Nakagawa, Atsushi and Iida, Hiroka and Kinjo, Mai and Ito, Koreaki and Suzuki, Mamoru

Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.

The EMBO journal, Mar, 2009 (LINK)

Yoshikawa, Hiroshi Y. and Murai, Ryota and Sugiyama, Shigeru and Sazaki, Gen and Kitatani, Tomoya and Takahashi, Yoshinori and Adachi, Hiroaki and Matsumura, Hiroyoshi and Murakami, Satoshi and Inoue, Tsuyoshi

Femtosecond laser-induced nucleation of protein in agarose gel

Journal of Crystal Growth, Jan, 2009 (LINK)

Murakami, Satoshi

Multidrug efflux transporter, AcrB--the pumping mechanism.

Current opinion in structural biology, Aug, 2008 (LINK)

Maki, S. and Murai, R. and Yoshikawa, H. Y. and Kitatani, T. and Nakata, S. and Kawahara, H. and Hasenaka, H. and Kobayashi, A. and Okada, S. and Sugiyama, S. and Adachi, H. and Matsumura, H. and Takano, K. and Murakami, S. and Inoue, T. and Sasaki, T. and Mori, Y.

Protein crystallization in a 100 nl solution with new stirring equipment.

Journal of synchrotron radiation, May, 2008 (LINK)

Murai, R. and Yoshikawa, H. and Kawahara, H. and Maki, S. and Sugiyama, S. and Kitatani, T. and Adachi, H. and Takano, K. and Matsumura, H. and Murakami, S.

Effect of solution flow produced by rotary shaker on protein crystallization

Journal of Crystal Growth, Apr, 2008 (LINK)

FEB1: 4articles(top)

Touhara, Kazushige and Vosshall, Leslie B.

Sensing odorants and pheromones with chemosensory receptors.

Annual review of physiology, 2009 (LINK)

Touhara, Kazushige

Sexual communication via peptide and protein pheromones.

Current opinion in pharmacology, Dec, 2008 (LINK)

Kimoto, Hiroko and Sato, Koji and Nodari, Francesco and Haga, Sachiko and Holy, Timothy E. and Touhara, Kazushige

Sex- and strain-specific expression and vomeronasal activity of mouse ESP family peptides.

Current biology : CB, Nov, 2007 (LINK)

Touhara, Kazushige

Molecular biology of peptide pheromone production and reception in mice.

Advances in genetics, 2007 (LINK)

FEB2: 5articles(top)

Singh, Satinder K. and Piscitelli, Chayne L. and Yamashita, Atsuko and Gouaux, Eric

A competitive inhibitor traps LeuT in an open-to-out conformation.

Science (New York, N.Y.), Dec, 2008 (LINK)

Shindo, Yoichiro and Miura, Hirohito and Carninci, Piero and Kawai, Jun and Hayashizaki, Yoshihide and Ninomiya, Yuzo and Hino, Akihiro and Kanda, Tomomasa and Kusakabe, Yuko

G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue.

Biochemical and biophysical research communications, Nov, 2008 (LINK)

Watanabe, Yo-Hei H. and Nakazaki, Yosuke and Suno, Ryoji and Yoshida, Masasuke

Stability of the two wings of the coiled-coil domain of ClpB chaperone is critical for its disaggregation activity.

The Biochemical journal, Jul, 2009 (LINK)

Ihara, Makoto and Okajima, Toshihide and Yamashita, Atsuko and Oda, Takuma and Hirata, Koichi and Nishiwaki, Hisashi and Morimoto, Takako and Akamatsu, Miki and Ashikawa, Yuji and Kuroda, Shun'ichi and Mega, Ryosuke and Kuramitsu, Seiki and Sattelle, David B. and Matsuda, Kazuhiko

Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.

Invertebrate neuroscience : IN, Jun, 2008 (LINK)

Singh, Satinder K. and Yamashita, Atsuko and Gouaux, Eric

Antidepressant binding site in a bacterial homologue of neurotransmitter transporters.

Nature, Aug, 2007 (LINK)

FEB3: 15articles(top)

Ogura, Kohei and Yamasaki, Masayuki and Yamada, Takashi and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Crystal Structure of Family 14 Polysaccharide Lyase with pH-dependent Modes of Action

Journal of Biological Chemistry, Dec, 2009 (LINK)

Rehm, Bernd

Alginates : biology and applications, 2009 (LINK)

Hashimoto, Wataru and Maruyama, Yukie and Itoh, Takafumi and Mikami, Bunzo and Murata, Kousaku

Bacterial System for Alginate Uptake and Degradation

Alginates: Biology and Applications, 2009 (LINK)

He, Jinshan and Ochiai, Akihito and Fukuda, Yasuki and Hashimoto, Wataru and Murata, Kousaku

A putative lipoprotein of Sphingomonas sp. strain A1 binds alginate rather than a lipid moiety.

FEMS microbiology letters, Nov, 2008 (LINK)

Hashimoto, Wataru and Itoh, Takafumi and Maruyama, Yukie and Mikami, Bunzo and Murata, Kousaku

Hydration of vinyl ether groups by unsaturated glycoside hydrolases and their role in bacterial pathogenesis.

International microbiology : the official journal of the Spanish Society for Microbiology, Dec, 2007 (LINK)

Ochiai, Akihito and Itoh, Takafumi and Maruyama, Yukie and Kawamata, Akiko and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

A novel structural fold in polysaccharide lyases: Bacillus subtilis family 11 rhamnogalacturonan lyase YesW with an eight-bladed beta-propeller.

The Journal of biological chemistry, Dec, 2007 (LINK)

Cui, Zhongli and Maruyama, Yukie and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1.

Journal of molecular biology, Nov, 2007 (LINK)

Maruyama, Yukie and Nakamichi, Yusuke and Itoh, Takafumi and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Substrate specificity of streptococcal unsaturated glucuronyl hydrolases for sulfated glycosaminoglycan.

The Journal of biological chemistry, Jul, 2009 (LINK)

Hashimoto, Wataru and Ochiai, Akihito and He, Jinshan and Itoh, Takafumi and Mikami, Bunzo and Murata, Kousaku

Crystallization and preliminary crystallographic analysis of the cell-surface alginate-binding protein Algp7 isolated from Sphingomonas sp. A1.

Acta crystallographica. Section F, Structural biology and crystallization communications, May, 2009 (LINK)

Ochiai, Akihito and Itoh, Takafumi and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases.

The Journal of biological chemistry, Apr, 2009 (LINK)

Hashimoto, Wataru and Ochiai, Akihito and Momma, Keiko and Itoh, Takafumi and Mikami, Bunzo and Maruyama, Yukie and Murata, Kousaku

Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ.

Biochemical and biophysical research communications, Mar, 2009 (LINK)

Ogura, Kohei and Yamasaki, Masayuki and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Substrate recognition by family 7 alginate lyase from Sphingomonas sp. A1.

Journal of molecular biology, Jul, 2008 (LINK)

Itoh, Takafumi and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase.

Journal of molecular biology, Apr, 2008 (LINK)

Maruyama, Yukie and Momma, Misato and Mikami, Bunzo and Hashimoto, Wataru and Murata, Kousaku

Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide.

Biochemistry, Feb, 2008 (LINK)

Murata, Kousaku and Kawai, Shigeyuki and Mikami, Bunzo and Hashimoto, Wataru

Superchannel of bacteria: biological significance and new horizons.

Bioscience, biotechnology, and biochemistry, Feb, 2008 (LINK)

FEB4: 12articles(top)

Nakamura, Akira and Wada, Chieko and Miki, Kunio

Structural basis for regulation of bifunctional roles in replication initiator protein.

Proceedings of the National Academy of Sciences of the United States of America, Nov, 2007 (LINK)

Yoshida, Shosuke and Atomi, Haruyuki and Imanaka, Tadayuki

Engineering of a type III rubisco from a hyperthermophilic archaeon in order to enhance catalytic performance in mesophilic host cells.

Applied and environmental microbiology, Oct, 2007 (LINK)

Numoto, Nobutaka and Hasegawa, Yu and Takeda, Kazuki and Miki, Kunio

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V(1)-ATPase.

EMBO reports, Sep, 2009 (LINK)

Watanabe, Satoshi and Arai, Takayuki and Matsumi, Rie and Atomi, Haruyuki and Imanaka, Tadayuki and Miki, Kunio

Crystal Structure of HypA, a Nickel-Binding Metallochaperone for [NiFe] Hydrogenase Maturation.

Journal of molecular biology, Sep, 2009 (LINK)

Su, Jian-Rong R. and Takeda, Kazuki and Tamura, Shigehiko and Fujiki, Yukio and Miki, Kunio

Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p.

Proceedings of the National Academy of Sciences of the United States of America, Jan, 2009 (LINK)

Iizuka, Ryo and Sugano, Yuri and Ide, Naoki and Ohtaki, Akashi and Yoshida, Takao and Fujiwara, Shinsuke and Imanaka, Tadayuki and Yohda, Masafumi

Functional characterization of recombinant prefoldin complexes from a hyperthermophilic archaeon, Thermococcus sp. strain KS-1.

Journal of molecular biology, Mar, 2008 (LINK)

Watanabe, Satoshi and Kita, Akiko and Kobayashi, Kazuo and Miki, Kunio

Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA.

Proceedings of the National Academy of Sciences of the United States of America, Mar, 2008 (LINK)

Santangelo, Thomas J. and Cubonová, L'ubom\'{\i}ra and Matsumi, Rie and Atomi, Haruyuki and Imanaka, Tadayuki and Reeve, John N.

Polarity in archaeal operon transcription in Thermococcus kodakaraensis.

Journal of bacteriology, Mar, 2008 (LINK)

Endoh, Takashi and Kanai, Tamotsu and Imanaka, Tadayuki

Effective approaches for the production of heterologous proteins using the Thermococcus kodakaraensis-based translation system.

Journal of biotechnology, Jan, 2008 (LINK)

Arai, Takayuki and Watanabe, Satoshi and Matsumi, Rie and Atomi, Haruyuki and Imanaka, Tadayuki and Miki, Kunio

Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1.

Acta crystallographica. Section F, Structural biology and crystallization communications, Sep, 2007 (LINK)

Hirano, Yu and Hossain, Md Motarab M. and Takeda, Kazuki and Tokuda, Hajime and Miki, Kunio

Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli.

Structure (London, England : 1993), Aug, 2007 (LINK)

Watanabe, Satoshi and Matsumi, Rie and Arai, Takayuki and Atomi, Haruyuki and Imanaka, Tadayuki and Miki, Kunio

Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling.

Molecular cell, Jul, 2007 (LINK)

FEB5: 23articles(top)

Yamamura, Akihiro and Maruoka, Shintaro and Ohtsuka, Jun and Miyakawa, Takuya and Nagata, Koji and Kataoka, Michihiko and Kitamura, Nahoko and Shimizu, Sakayu and Tanokura, Masaru

Expression, purification, crystallization and preliminary X-ray analysis of conjugated polyketone reductase C2 (CPR-C2) from Candida parapsilosis IFO 0708.

Acta crystallographica. Section F, Structural biology and crystallization communications, Nov, 2009 (LINK)

Kodera, Tomohiro and Smirnov, Sergey V. and Samsonova, Natalya N. and Kozlov, Yuly I. and Koyama, Ryokichi and Hibi, Makoto and Ogawa, Jun and Yokozeki, Kenzo and Shimizu, Sakayu

A novel L-isoleucine hydroxylating enzyme, L-isoleucine dioxygenase from Bacillus thuringiensis, produces (2S,3R,4S)-4-hydroxyisoleucine.

Biochemical and biophysical research communications, Oct, 2009 (LINK)

Flickinger, Michael C.

Encyclopedia of biotechnology : bioprocess, bioseparation & cell technology, 2009 (LINK)

Watanabe, Makoto

Biseibutsu no jiten, 2008 (LINK)

Ueda, Mitsuyoshi

Biseibutsu kino no kaihatsu, 2008 (LINK)

Ohshiro, Takashi and Ohkita, Ryo and Takikawa, Takeshi and Manabe, Masanori and Lee, Woo Cheol C. and Tanokura, Masaru and Izumi, Yoshikazu

Improvement of 2'-hydroxybiphenyl-2-sulfinate desulfinase, an enzyme involved in the dibenzothiophene desulfurization pathway, from Rhodococcus erythropolis KA2-5-1 by site-directed mutagenesis.

Bioscience, biotechnology, and biochemistry, Nov, 2007 (LINK)

Nakatani, Masato and Hibi, Makoto and Minoda, Masashi and Ogawa, Jun and Yokozeki, Kenzo and Shimizu, Sakayu

Two laccase isoenzymes and a peroxidase of a commercial laccase-producing basidiomycete, Trametes sp. Ha1.

New biotechnology, Feb, 2010 (LINK)

Kishino, Shigenobu and Ogawa, Jun and Yokozeki, Kenzo and Shimizu, Sakayu

Metabolic diversity in biohydrogenation of polyunsaturated fatty acids by lactic acid bacteria involving conjugated fatty acid production.

Applied microbiology and biotechnology, Aug, 2009 (LINK)

Takeshita, Daijiro and Kataoka, Michihiko and Miyakawa, Takuya and Miyazono, Ken-ichi and Uzura, Atsuko and Nagata, Koji and Shimizu, Sakayu and Tanokura, Masaru

Crystallization and preliminary X-ray analysis of the NADPH-dependent 3-quinuclidinone reductase from Rhodotorula rubra.

Acta crystallographica. Section F, Structural biology and crystallization communications, Jun, 2009 (LINK)

Uzura, Atsuko and Nomoto, Fumiki and Sakoda, Akiko and Nishimoto, Yukifumi and Kataoka, Michihiko and Shimizu, Sakayu

Stereoselective synthesis of (R)-3-quinuclidinol through asymmetric reduction of 3-quinuclidinone with 3-quinuclidinone reductase of Rhodotorula rubra.

Applied microbiology and biotechnology, Jun, 2009 (LINK)

Ando, Akinori and Sakuradani, Eiji and Horinaka, Kota and Ogawa, Jun and Shimizu, Sakayu

Transformation of an oleaginous zygomycete Mortierella alpina 1S-4 with the carboxin resistance gene conferred by mutation of the iron-sulfur subunit of succinate dehydrogenase.

Current genetics, Jun, 2009 (LINK)

Kitahara, K. and Suzuki, T.

The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli.

Molecular cell, Jun, 2009 (LINK)

Sakuradani, Eiji and Nojiri, Masutoshi and Suzuki, Haruna and Shimizu, Sakayu

Identification of a novel fatty acid elongase with a wide substrate specificity from arachidonic acid-producing fungus Mortierella alpina 1S-4.

Applied microbiology and biotechnology, May, 2009 (LINK)

Takahashi, Yasuyuki and Teshima, Kosuke M. and Yokoi, Shuji and Innan, Hideki and Shimamoto, Ko

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.

Proceedings of the National Academy of Sciences of the United States of America, Mar, 2009 (LINK)

Isobe, Kimiyasu and Takahashi, Toyofumi and Ogawa, Jun and Kataoka, Michihiko and Shimizu, Sakayu

Production and characterization of alcohol oxidase from Penicillium purpurescens AIU 063.

Journal of bioscience and bioengineering, Feb, 2009 (LINK)

Sakuradani, Eiji and Abe, Takahiro and Matsumura, Kenji and Tomi, Akiko and Shimizu, Sakayu

Identification of mutation sites on Delta12 desaturase genes from Mortierella alpina 1S-4 mutants.

Journal of bioscience and bioengineering, Feb, 2009 (LINK)

Ohto, Chikara and Muramatsu, Masayoshi and Obata, Shusei and Sakuradani, Eiji and Shimizu, Sakayu

Prenyl alcohol production by expression of exogenous isopentenyl diphosphate isomerase and farnesyl diphosphate synthase genes in Escherichia coli.

Bioscience, biotechnology, and biochemistry, Jan, 2009 (LINK)

Sakuradani, Eiji and Abe, Takahiro and Shimizu, Sakayu

Identification of mutation sites on omega3 desaturase genes from Mortierella alpina 1S-4 mutants.

Journal of bioscience and bioengineering, Jan, 2009 (LINK)

Kataoka, M. and Ishige, T. and Urano, N. and Nakamura, Y. and Sakuradani, E. and Fukui, S. and Kita, S. and Sakamoto, K. and Shimizu, S.

Cloning and expression of the L-1-amino-2-propanol dehydrogenase gene from Rhodococcus erythropolis, and its application to double chiral compound production.

Applied microbiology and biotechnology, Sep, 2008 (LINK)

Kataoka, Michihiko and Shimizu, Sakayu

Screening of Novel Microbial Enzymes and Their Application to Chiral Compound Production, 2008 (LINK)

Ito, Kosuke and Nakanishi, Masayuki and Lee, Woo-Cheol C. and Zhi, Yuehua and Sasaki, Hiroshi and Zenno, Shuhei and Saigo, Kaoru and Kitade, Yukio and Tanokura, Masaru

Expansion of substrate specificity and catalytic mechanism of azoreductase by X-ray crystallography and site-directed mutagenesis.

The Journal of biological chemistry, May, 2008 (LINK)

Yamamura, Akihiro and Ichimura, Takefumi and Mimoto, Futa and Ohtsuka, Jun and Miyazono, Ken-ichi and Okai, Masahiko and Kamo, Masayuki and Lee, Woo-Cheol C. and Nagata, Koji and Tanokura, Masaru

A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1.

Proteins, Mar, 2008 (LINK)

Ogawa, Jun and Yamanaka, Hiroyuki and Mano, Junichi and Doi, Yuko and Horinouchi, Nobuyuki and Kodera, Tomohiro and Nio, Noriki and Smirnov, Sergey V. and Samsonova, Natalya N. and Kozlov, Yury I. and Shimizu, Sakayu

Synthesis of 4-hydroxyisoleucine by the aldolase-transaminase coupling reaction and basic characterization of the aldolase from Arthrobacter simplex AKU 626.

Bioscience, biotechnology, and biochemistry, Jul, 2007 (LINK)

FEB6: 13articles(top)

Thao, Nguyen Phuong P. and Chen, Letian and Nakashima, Ayako and Hara, Shin-ichiro and Umemura, Kenji and Takahashi, Akira and Shirasu, Ken and Kawasaki, Tsutomu and Shimamoto, Ko

RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.

The Plant cell, Dec, 2007 (LINK)

Wong, Hann Ling L. and Pinontoan, Reinhard and Hayashi, Kokoro and Tabata, Ryo and Yaeno, Takashi and Hasegawa, Kana and Kojima, Chojiro and Yoshioka, Hirofumi and Iba, Koh and Kawasaki, Tsutomu and Shimamoto, Ko

Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension.

The Plant cell, Dec, 2007 (LINK)

Fujiwara, Tadashi and Maisonneuve, Sylvie and Isshiki, Masayuki and Mizutani, Masaharu and Chen, Letian and Wong, Hann Ling L. and Kawasaki, Tsutomu and Shimamoto, Ko

Sekiguchi lesion gene encodes a cytochrome p450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.

The Journal of biological chemistry, Feb, 2010 (LINK)

Wong, Hann L. and Shimamoto, Ko

Sending ROS on a Bullet Train

Sci. Signal., Sep, 2009 (LINK)

Komiya, Reina and Yokoi, Shuji and Shimamoto, Ko

A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice

Development, Sep, 2009 (LINK)

Fujiwara, Masayuki and Hamada, Satoshi and Hiratsuka, Minori and Fukao, Yoichiro and Kawasaki, Tsutomu and Shimamoto, Ko

Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice.

Plant & cell physiology, Jul, 2009 (LINK)

Ishikawa, Ryo and Shinomura, Tomoko and Takano, Makoto and Shimamoto, Ko

Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering.

Genes & genetic systems, Apr, 2009 (LINK)

Purwestri, Yekti Asih A. and Ogaki, Yuka and Tamaki, Shojiro and Tsuji, Hiroyuki and Shimamoto, Ko

The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.

Plant & cell physiology, Mar, 2009 (LINK)

Tsuji, Hiroyuki and Tamaki, Shojiro and Komiya, Reina and Shimamoto, Ko

Florigen and the Photoperiodic Control of Flowering in Rice

Rice, Sep, 2008 (LINK)

Nakashima, Ayako and Chen, Letian and Thao, Nguyen Phuong P. and Fujiwara, Masayuki and Wong, Hann Ling L. and Kuwano, Masayoshi and Umemura, Kenji and Shirasu, Ken and Kawasaki, Tsutomu and Shimamoto, Ko

RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.

The Plant cell, Aug, 2008 (LINK)

Akaboshi, Mayuko and Hashimoto, Hiroshi and Ishida, Hanako and Saijo, Shinya and Koizumi, Nozomu and Sato, Mamoru and Shimizu, Toshiyuki

The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.

Journal of molecular biology, Mar, 2008 (LINK)

Abe, Makoto and Fujiwara, Masayuki and Kurotani, Ken-Ichi and Yokoi, Shuji and Shimamoto, Ko

Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).

Plant & cell physiology, Mar, 2008 (LINK)

Komiya, Reina and Ikegami, Akiko and Tamaki, Shojiro and Yokoi, Shuji and Shimamoto, Ko

Hd3a and RFT1 are essential for flowering in rice.

Development (Cambridge, England), Feb, 2008 (LINK)

Protein Production

PPC1: 45articles(top)

外山光俊 and 白水美香子 and 横山茂之

X線結晶構造解析を目指したタンパク質の無細胞発現系

生体の科学, 2009

Mikami, Satoshi and Kobayashi, Tominari and Masutani, Mamiko and Yokoyama, Shigeyuki and Imataka, Hiroaki

A human cell-derived in vitro coupled transcription/translation system optimized for production of recombinant proteins.

Protein expression and purification, Dec, 2008 (LINK)

Yanagisawa, Tatsuo and Ishii, Ryohei and Fukunaga, Ryuya and Kobayashi, Takatsugu and Sakamoto, Kensaku and Yokoyama, Shigeyuki

Multistep engineering of pyrrolysyl-tRNA synthetase to genetically encode N(epsilon)-(o-azidobenzyloxycarbonyl) lysine for site-specific protein modification.

Chemistry & biology, Nov, 2008 (LINK)

Kondo, Toru

Tokushu gankansaibo to bisho kankyo o meguru bunshi kiko, 2008 (LINK)

Hase, Toshiharu and Takao, Toshifumi and Takagi, Jun'ichi

Tanpakushitsu o tsukuru : chushutsu seisei to gosei, 2008 (LINK)

Kimoto, Michiko and Kawai, Rie and Mitsui, Tsuneo and Yokoyama, Shigeyuki and Hirao, Ichiro

Efficient PCR amplification by an unnatural base pair system.

Nucleic acids symposium series (2004), 2008 (LINK)

Kimoto, Michiko and Kawai, Rie and Mitsui, Tsuneo and Yokoyama, Shigeyuki and Hirao, Ichiro

Sequences around the unnatural base pair in DNA templates for efficient replication.

Nucleic acids symposium series (2004), 2008 (LINK)

Nozawa, Akira and Nanamiya, Hideaki and Miyata, Takuji and Linka, Nicole and Endo, Yaeta and Weber, Andreas P. and Tozawa, Yuzuru

A cell-free translation and proteoliposome reconstitution system for functional analysis of plant solute transporters.

Plant & cell physiology, Dec, 2007 (LINK)

Germain, Hugo and Houde, Josée and Gray-Mitsumune, Madoka and Sawasaki, Tatsuya and Endo, Yaeta and Rivoal, Jean and Matton, Daniel P.

Characterization of ScORK28, a transmembrane functional protein receptor kinase predominantly expressed in ovaries from the wild potato species Solanum chacoense.

FEBS letters, Oct, 2007 (LINK)

Chikayama, Eisuke and Kurotani, Atsushi and Tanaka, Takanori and Yabuki, Takashi and Miyazaki, Satoshi and Yokoyama, Shigeyuki and Kuroda, Yutaka

Mathematical model for empirically optimizing large scale production of soluble protein domains.

BMC bioinformatics, Mar, 2010 (LINK)

Shida, Meiri and Arakawa, Akihiko and Ishii, Ryohei and Kishishita, Seiichiro and Takagi, Tetsuo and Kukimoto-Niino, Mutsuko and Sugano, Sumio and Tanaka, Akiko and Shirouzu, Mikako and Yokoyama, Shigeyuki

Direct inter-subdomain interactions switch between the closed and open forms of the Hsp70 nucleotide-binding domain in the nucleotide-free state.

Acta crystallographica. Section D, Biological crystallography, Mar, 2010 (LINK)

Shimada, Atsushi and Takano, Kazunori and Shirouzu, Mikako and Hanawa-Suetsugu, Kyoko and Terada, Takaho and Toyooka, Kiminori and Umehara, Takashi and Yamamoto, Masaki and Yokoyama, Shigeyuki and Suetsugu, Shiro

Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II.

FEBS letters, Feb, 2010 (LINK)

Iraha, Fumie and Oki, Kenji and Kobayashi, Takatsugu and Ohno, Satoshi and Yokogawa, Takashi and Nishikawa, Kazuya and Yokoyama, Shigeyuki and Sakamoto, Kensaku

Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion.

Nucleic acids research, Feb, 2010 (LINK)

Takai, Kazuyuki and Sawasaki, Tatsuya and Endo, Yaeta

Practical cell-free protein synthesis system using purified wheat embryos.

Nature protocols, Feb, 2010 (LINK)

Wakiyama, Motoaki and Kaitsu, Yoko and Matsumoto, Tomoko and Yokoyama, Shigeyuki

Coupled transcription-and-translation from PCR-amplified DNA in Drosophila S2 cell-free system.

Analytical biochemistry, Jan, 2010 (LINK)

Mukai, Takahito and Wakiyama, Motoaki and Sakamoto, Kensaku and Yokoyama, Shigeyuki

Genetic encoding of non-natural amino acids in Drosophila melanogaster Schneider 2 cells.

Protein science : a publication of the Protein Society, Jan, 2010 (LINK)

He, Fahu and Saito, Kohei and Kobayashi, Naohiro and Harada, Takushi and Watanabe, Satoru and Kigawa, Takanori and Güntert, Peter and Ohara, Osamu and Tanaka, Akiko and Unzai, Satoru and Muto, Yutaka and Yokoyama, Shigeyuki

Structural and Functional Characterization of the NHR1 Domain of the Drosophila Neuralized E3 Ligase in the Notch Signaling Pathway.

Journal of molecular biology, Aug, 2009 (LINK)

Aoki, Masaaki and Matsuda, Takayoshi and Tomo, Yasuko and Miyata, Yukako and Inoue, Makoto and Kigawa, Takanori and Yokoyama, Shigeyuki

Automated system for high-throughput protein production using the dialysis cell-free method.

Protein expression and purification, Aug, 2009 (LINK)

Nozawa, Akira and Matsubara, Yuko and Tanaka, Yoshinori and Takahashi, Hirotaka and Akagi, Tatsuya and Seki, Motoaki and Shinozaki, Kazuo and Endo, Yaeta and Sawasaki, Tatsuya

Construction of a Protein Library of Arabidopsis Transcription Factors Using a Wheat Cell-Free Protein Production System and Its Application for DNA Binding Analysis.

Bioscience, biotechnology, and biochemistry, Jul, 2009 (LINK)

Yamamura, Akihiro and Ichimura, Takefumi and Kamekura, Masahiro and Mizuki, Toru and Usami, Ron and Makino, Tsukasa and Ohtsuka, Jun and Miyazono, Ken-ichi and Okai, Masahiko and Nagata, Koji and Tanokura, Masaru

Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases.

Biophysical journal, Jun, 2009 (LINK)

Takimoto, Koji and Wakiyama, Motoaki and Yokoyama, Shigeyuki

Mammalian GW182 contains multiple Argonaute-binding sites and functions in microRNA-mediated translational repression.

RNA (New York, N.Y.), Jun, 2009 (LINK)

Tsuda, Kengo and Kuwasako, Kanako and Takahashi, Mari and Someya, Tatsuhiko and Inoue, Makoto and Terada, Takaho and Kobayashi, Naohiro and Shirouzu, Mikako and Kigawa, Takanori and Tanaka, Akiko and Sugano, Sumio and Güntert, Peter and Muto, Yutaka and Yokoyama, Shigeyuki

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3.

Nucleic acids research, Jun, 2009 (LINK)

Naganuma, Masahiro and Sekine, Shun-ichi and Fukunaga, Ryuya and Yokoyama, Shigeyuki

Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.

Proceedings of the National Academy of Sciences of the United States of America, May, 2009 (LINK)

Osada, Eriko and Shimizu, Yoshihiro and Akbar, Bintang K. and Kanamori, Takashi and Ueda, Takuya

Epitope mapping using ribosome display in a reconstituted cell-free protein synthesis system.

Journal of biochemistry, May, 2009 (LINK)

Wang, Hongfei and Takemoto, Chie and Akasaka, Ryogo and Uchikubo-Kamo, Tomomi and Kishishita, Seiichiro and Murayama, Kazutaka and Terada, Takaho and Chen, Lirong and Liu, Zhi-Jie J. and Wang, Bi-Cheng C. and Sugano, Sumio and Tanaka, Akiko and Inoue, Makoto and Kigawa, Takanori and Shirouzu, Mikako and Yokoyama, Shigeyuki

Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.

Journal of structural biology, Apr, 2009 (LINK)

Niwa, Tatsuya and Ying, Bei-Wen W. and Saito, Katsuyo and Jin, WenZhen and Takada, Shoji and Ueda, Takuya and Taguchi, Hideki

Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins.

Proceedings of the National Academy of Sciences of the United States of America, Mar, 2009 (LINK)

He, Fahu and Dang, Weirong and Saito, Kohei and Watanabe, Satoru and Kobayashi, Naohiro and Güntert, Peter and Kigawa, Takanori and Tanaka, Akiko and Muto, Yutaka and Yokoyama, Shigeyuki

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily.

Protein science : a publication of the Protein Society, Mar, 2009 (LINK)

Sakamoto, Kensaku and Murayama, Kazutaka and Oki, Kenji and Iraha, Fumie and Kato-Murayama, Miyuki and Takahashi, Masahiro and Ohtake, Kazumasa and Kobayashi, Takatsugu and Kuramitsu, Seiki and Shirouzu, Mikako and Yokoyama, Shigeyuki

Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography.

Structure (London, England : 1993), Mar, 2009 (LINK)

Kuruma, Yutetsu and Stano, Pasquale and Ueda, Takuya and Luisi, Pier Luigi L.

A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells.

Biochimica et biophysica acta, Feb, 2009 (LINK)

Kimoto, Michiko and Kawai, Rie and Mitsui, Tsuneo and Yokoyama, Shigeyuki and Hirao, Ichiro

An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules.

Nucleic acids research, Feb, 2009 (LINK)

Kobayashi, Takatsugu and Yanagisawa, Tatsuo and Sakamoto, Kensaku and Yokoyama, Shigeyuki

Recognition of non-alpha-amino substrates by pyrrolysyl-tRNA synthetase.

Journal of molecular biology, Feb, 2009 (LINK)

Oki, Kenji and Sakamoto, Kensaku and Kobayashi, Takatsugu and Sasaki, Hiroshi M. and Yokoyama, Shigeyuki

Transplantation of a tyrosine editing domain into a tyrosyl-tRNA synthetase variant enhances its specificity for a tyrosine analog.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2008 (LINK)

Ishizawa, Toshihiro and Nozaki, Yusuke and Ueda, Takuya and Takeuchi, Nono

The human mitochondrial translation release factor HMRF1L is methylated in the GGQ motif by the methyltransferase HMPrmC.

Biochemical and biophysical research communications, Aug, 2008 (LINK)

Kobayashi, Tamiyo and Kodani, Yoshiko and Nozawa, Akira and Endo, Yaeta and Sawasaki, Tatsuya

DNA-binding profiling of human hormone nuclear receptors via fluorescence correlation spectroscopy in a cell-free system.

FEBS letters, Aug, 2008 (LINK)

Fukunaga, Ryuya and Harada, Yoko and Hirao, Ichiro and Yokoyama, Shigeyuki

Phosphoserine aminoacylation of tRNA bearing an unnatural base anticodon.

Biochemical and biophysical research communications, Aug, 2008 (LINK)

Kagawa, Wataru and Kagawa, Ako and Saito, Kengo and Ikawa, Shukuko and Shibata, Takehiko and Kurumizaka, Hitoshi and Yokoyama, Shigeyuki

Identification of a second DNA binding site in the human Rad52 protein.

The Journal of biological chemistry, Aug, 2008 (LINK)

Mukai, Takahito and Kobayashi, Takatsugu and Hino, Nobumasa and Yanagisawa, Tatsuo and Sakamoto, Kensaku and Yokoyama, Shigeyuki

Adding l-lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases.

Biochemical and biophysical research communications, Jul, 2008 (LINK)

Masaoka, Takashi and Nishi, Mayuko and Ryo, Akihide and Endo, Yaeta and Sawasaki, Tatsuya

The wheat germ cell-free based screening of protein substrates of calcium/calmodulin-dependent protein kinase II delta.

FEBS letters, Jun, 2008 (LINK)

Sawasaki, Tatsuya and Nishihara, Masahiro and Endo, Yaeta

RIP and RALyase cleave the sarcin/ricin domain, a critical domain for ribosome function, during senescence of wheat coleoptiles.

Biochemical and biophysical research communications, Jun, 2008 (LINK)

Yanagisawa, Tatsuo and Ishii, Ryohei and Fukunaga, Ryuya and Kobayashi, Takatsugu and Sakamoto, Kensaku and Yokoyama, Shigeyuki

Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase.

Journal of molecular biology, May, 2008 (LINK)

Tsuboi, Takafumi and Takeo, Satoru and Iriko, Hideyuki and Jin, Ling and Tsuchimochi, Masateru and Matsuda, Shusaku and Han, Eun-Taek T. and Otsuki, Hitoshi and Kaneko, Osamu and Sattabongkot, Jetsumon and Udomsangpetch, Rachanee and Sawasaki, Tatsuya and Torii, Motomi and Endo, Yaeta

Wheat germ cell-free system-based production of malaria proteins for discovery of novel vaccine candidates.

Infection and immunity, Apr, 2008 (LINK)

Ozaki, Yoko and Suzuki, Toshiharu and Kuruma, Yutetsu and Ueda, Takuya and Yoshida, Masasuke

UncI protein can mediate ring-assembly of c-subunits of FoF1-ATP synthase in vitro.

Biochemical and biophysical research communications, Mar, 2008 (LINK)

Bardóczy, Viola and Géczi, Viktória and Sawasaki, Tatsuya and Endo, Yaeta and Mészáros, Tamás

A set of ligation-independent in vitro translation vectors for eukaryotic protein production.

BMC biotechnology, Mar, 2008 (LINK)

Matsumoto, Keisuke and Tomikawa, Chie and Toyooka, Takashi and Ochi, Anna and Takano, Yoshitaka and Takayanagi, Naoyuki and Abe, Masato and Endo, Yaeta and Hori, Hiroyuki

Production of yeast tRNA (m(7)G46) methyltransferase (Trm8-Trm82 complex) in a wheat germ cell-free translation system.

Journal of biotechnology, Feb, 2008 (LINK)

Sawasaki, Tatsuya and Kamura, Nami and Matsunaga, Satoko and Saeki, Mihoro and Tsuchimochi, Masateru and Morishita, Ryo and Endo, Yaeta

Arabidopsis HY5 protein functions as a DNA-binding tag for purification and functional immobilization of proteins on agarose/DNA microplate.

FEBS letters, Jan, 2008 (LINK)

PPD1: 5articles(top)

Yasui, Norihisa and Mihara, Emiko and Nampo, Maiko and Tamura-Kawakami, Keiko and Unno, Hideaki and Matsumoto, Kyoichi and Takagi, Junichi

Detection of endogenous LRP6 expressed on human cells by monoclonal antibodies specific for the native conformation.

Journal of immunological methods, Nov, 2009 (LINK)

Nogi, Terukazu and Sangawa, Takeshi and Tabata, Sanae and Nagae, Masamichi and Tamura-Kawakami, Keiko and Beppu, Ayako and Hattori, Mitsuharu and Yasui, Norihisa and Takagi, Junichi

Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification.

Protein science : a publication of the Protein Society, Dec, 2008 (LINK)

Nagae, Masamichi and Nishikawa, Ken and Yasui, Norihisa and Yamasaki, Motoo and Nogi, Terukazu and Takagi, Junichi

Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop.

Acta crystallographica. Section D, Biological crystallography, Nov, 2008 (LINK)

Sangawa, Takeshi and Nogi, Terukazu and Takagi, Junichi

A murine monoclonal antibody that binds N-terminal extracellular segment of human protease-activated receptor-4.

Hybridoma (2005), Oct, 2008 (LINK)

Yamaguchi, Hiroshi and Takagi, Junichi and Miyamae, Takako and Yokota, Shumpei and Fujimoto, Takashi and Nakamura, Shinobu and Ohshima, Shiro and Naka, Tetsuji and Nagata, Shigekazu

Milk fat globule EGF factor 8 in the serum of human patients of systemic lupus erythematosus.

Journal of leukocyte biology, May, 2008 (LINK)

PPD2: 5articles(top)

Terakado, Kanako and Kodan, Atsushi and Nakano, Hiroaki and Kimura, Yasuhisa and Ueda, Kazumitsu and Nakatsu, Toru and Kato, Hiroaki

Deleting two C-terminal alpha-helices is effective to crystallize the bacterial ABC transporter Escherichia coli MsbA complexed with AMP-PNP.

Acta crystallographica. Section D, Biological crystallography, Mar, 2010 (LINK)

Ikeya, Teppei and Takeda, Mitsuhiro and Yoshida, Hitoshi and Terauchi, Tsutomu and Jee, Jun-Goo and Kainosho, Masatsune and Güntert, Peter

Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system

Journal of Biomolecular NMR, Aug, 2009 (LINK)

Kodan, Atsushi and Shibata, Hiroyuki and Matsumoto, Takashi and Terakado, Kanako and Sakiyama, Keita and Matsuo, Michinori and Ueda, Kazumitsu and Kato, Hiroaki

Improved expression and purification of human multidrug resistance protein MDR1 from baculovirus-infected insect cells.

Protein expression and purification, Jul, 2009 (LINK)

Egawa, Kyoko and Shibata, Hiroyuki and Yamashita, Shun-ichi and Yurimoto, Hiroya and Sakai, Yasuyoshi and Kato, Hiroaki

Overexpression and purification of rat peroxisomal membrane protein 22, PMP22, in Pichia pastoris.

Protein expression and purification, Mar, 2009 (LINK)

Sato, Yasuhiko and Shibata, Hiroyuki and Nakano, Hiroaki and Matsuzono, Yuji and Kashiwayama, Yoshinori and Kobayashi, Yuji and Fujiki, Yukio and Imanaka, Tsuneo and Kato, Hiroaki

Characterization of the interaction between recombinant human peroxin Pex3p and Pex19p: identification of TRP-104 IN Pex3p as a critical residue for the interaction.

The Journal of biological chemistry, Mar, 2008 (LINK)

PPD3: 11articles(top)

Drew, David and Klepsch, Mirjam M. and Newstead, Simon and Flaig, Ralf and De Gier, Jan-Willem W. and Iwata, So and Beis, Konstantinos

The structure of the efflux pump AcrB in complex with bile acid.

Molecular membrane biology, Dec, 2008 (LINK)

Newstead, Simon and Hobbs, Jeanette and Jordan, Davina and Carpenter, Elisabeth P. and Iwata, So

Insights into outer membrane protein crystallization.

Molecular membrane biology, Dec, 2008 (LINK)

Carpenter, Elisabeth P. and Beis, Konstantinos and Cameron, Alexander D. and Iwata, So

Overcoming the challenges of membrane protein crystallography.

Current opinion in structural biology, Oct, 2008 (LINK)

Weyand, Simone and Shimamura, Tatsuro and Yajima, Shunsuke and Suzuki, Shun'ichi and Mirza, Osman and Krusong, Kuakarun and Carpenter, Elisabeth P. and Rutherford, Nicholas G. and Hadden, Jonathan M. and O'Reilly, John and Ma, Pikyee and Saidijam, Massoud and Patching, Simon G. and Hope, Ryan J. and Norbertczak, Halina T. and Roach, Peter C. and Iwata, So and Henderson, Peter J. and Cameron, Alexander D.

Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter.

Science (New York, N.Y.), Oct, 2008 (LINK)

Tanabe, Mikio and Mirza, Osman and Bertrand, Thomas and Atkins, Helen S. and Titball, Richard W. and Iwata, So and Brown, Katherine A. and Byrne, Bernadette

Structures of OppA and PstS from Yersinia pestis indicate variability of interactions with transmembrane domains.

Acta crystallographica. Section D, Biological crystallography, Nov, 2007 (LINK)

Yurugi-Kobayashi, Takami and Asada, Hidetsugu and Shiroishi, Mitsunori and Shimamura, Tatsuro and Funamoto, Saeko and Katsuta, Naoko and Ito, Keisuke and Sugawara, Taishi and Tokuda, Natsuko and Tsujimoto, Hirokazu and Murata, Takeshi and Nomura, Norimichi and Haga, Kazuko and Haga, Tatsuya and Iwata, So and Kobayashi, Takuya

Comparison of functional non-glycosylated GPCRs expression in Pichia pastoris.

Biochemical and biophysical research communications, Mar, 2009 (LINK)

Kouwen, Thijs R. and Andréll, Juni and Schrijver, Rianne and Dubois, Jean-Yves Y. and Maher, Megan J. and Iwata, So and Carpenter, Elisabeth P. and van Dijl, Jan Maarten M.

Thioredoxin A active-site mutants form mixed disulfide dimers that resemble enzyme-substrate reaction intermediates.

Journal of molecular biology, Jun, 2008 (LINK)

Drew, David and Newstead, Simon and Sonoda, Yo and Kim, Hyun and von Heijne, Gunnar and Iwata, So

GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae.

Nature protocols, Apr, 2008 (LINK)

Newstead, Simon and Ferrandon, Sébastien and Iwata, So

Rationalizing alpha-helical membrane protein crystallization.

Protein science : a publication of the Protein Society, Mar, 2008 (LINK)

Guan, Lan and Mirza, Osman and Verner, Gillian and Iwata, So and Kaback, H. Ronald

Structural determination of wild-type lactose permease.

Proceedings of the National Academy of Sciences of the United States of America, Sep, 2007 (LINK)

Newstead, Simon and Kim, Hyun and von Heijne, Gunnar and Iwata, So and Drew, David

High-throughput fluorescent-based optimization of eukaryotic membrane protein overexpression and purification in Saccharomyces cerevisiae.

Proceedings of the National Academy of Sciences of the United States of America, Aug, 2007 (LINK)

Structural Analysis

SAC1: 2articles(top)

Hiraki, Masahiko and Watanabe, Shokei and Phonda, Nobuo and Yamada, Yusuke and Matsugaki, Naohiro and Igarashi, Noriyuki and Gaponov, Yurii and Wakatsuki, Soichi

High-throughput operation of sample-exchange robots with double tongs at the Photon Factory beamlines.

Journal of synchrotron radiation, May, 2008 (LINK)

Yamada, Yusuke and Phonda, Nobuo and Matsugaki, Naohiro and Igarashi, Noriyuki and Hiraki, Masahiko and Wakatsuki, Soichi

Implementation of remote monitoring and diffraction evaluation systems at the Photon Factory macromolecular crystallography beamlines.

Journal of synchrotron radiation, May, 2008 (LINK)

SAD1: 12articles(top)

Umetsu, Yoshitaka and Aizawa, Tomoyasu and Muto, Kaori and Yamamoto, Hiroko and Kamiya, Masakatsu and Kumaki, Yasuhiro and Mizuguchi, Mineyuki and Demura, Makoto and Hayakawa, Yoichi and Kawano, Keiichi

C-terminal Elongation of Growth-blocking Peptide Enhances Its Biological Activity and Micelle Binding Affinity.

The Journal of biological chemistry, Oct, 2009 (LINK)

Kubo, Megumi and Kikukawa, Takashi and Miyauchi, Seiji and Seki, Akiteru and Kamiya, Masakatsu and Aizawa, Tomoyasu and Kawano, Keiichi and Kamo, Naoki and Demura, Makoto

Role of Arg123 in light-driven anion pump mechanisms of pharaonis halorhodopsin.

Photochemistry and photobiology, 2009 (LINK)

Sasaki, Takanori and Kubo, Megumi and Kikukawa, Takashi and Kamiya, Masakatsu and Aizawa, Tomoyasu and Kawano, Keiichi and Kamo, Naoki and Demura, Makoto

Halorhodopsin from natronomonas pharaonis forms a trimer even in the presence of a detergent, dodecyl-beta-D-maltoside.

Photochemistry and photobiology, 2009 (LINK)

Hayashi, Kokoro and Kojima, Chojiro

pCold-GST vector: a novel cold-shock vector containing GST tag for soluble protein production.

Protein expression and purification, Nov, 2008 (LINK)

Kouno, Takahide and Fujitani, Naoki and Mizuguchi, Mineyuki and Osaki, Tsukasa and Nishimura, Shin-ichiro and Kawabata, Shun-ichiro and Aizawa, Tomoyasu and Demura, Makoto and Nitta, Katsutoshi and Kawano, Keiichi

A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria.

Biochemistry, Oct, 2008 (LINK)

Nakamura, Takumi and Takeuchi, Satoshi and Shibata, Mikihiro and Demura, Makoto and Kandori, Hideki and Tahara, Tahei

Ultrafast pump-probe study of the primary photoreaction process in pharaonis halorhodopsin: halide ion dependence and isomerization dynamics.

The journal of physical chemistry. B, Oct, 2008 (LINK)

Hayashi, Kokoro and Sudo, Yuki and Jee, JunGoo and Mishima, Masaki and Hara, Hideyuki and Kamo, Naoki and Kojima, Chojiro

Structural analysis of the phototactic transducer protein HtrII linker region from Natronomonas pharaonis.

Biochemistry, Dec, 2007 (LINK)

Takahashi, Hiroki and Kainosho, Masatsune and Akutsu, Hideo and Fujiwara, Toshimichi

(1)H-detected (1)H-(1)H correlation spectroscopy of a stereo-array isotope labeled amino acid under fast magic-angle spinning.

Journal of magnetic resonance (San Diego, Calif. : 1997), Jan, 2010 (LINK)

Inoue, Keiichi and Kubo, Megumi and Demura, Makoto and Kamo, Naoki and Terazima, Masahide

Reaction dynamics of halorhodopsin studied by time-resolved diffusion.

Biophysical journal, May, 2009 (LINK)

Nonaka, Yasuhiro and Akieda, Daisuke and Aizawa, Tomoyasu and Watanabe, Nobuhisa and Kamiya, Masakatsu and Kumaki, Yasuhiro and Mizuguchi, Mineyuki and Kikukawa, Takashi and Demura, Makoto and Kawano, Keiichi

X-ray crystallography and structural stability of digestive lysozyme from cow stomach.

The FEBS journal, Apr, 2009 (LINK)

Nonaka, Yasuhiro and Aizawa, Tomoyasu and Akieda, Daisuke and Yasui, Masanori and Watanabe, Masahiro and Watanabe, Nobuhisa and Tanaka, Isao and Kamiya, Masakatsu and Mizuguchi, Mineyuki and Demura, Makoto and Kawano, Keiichi

Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions.

Proteins, Jul, 2008 (LINK)

Sudo, Yuki and Nishihori, Tatsuya and Iwamoto, Masayuki and Shimono, Kazumi and Kojima, Chojiro and Kamo, Naoki

A long-lived M-like state of phoborhodopsin that mimics the active state.

Biophysical journal, Jul, 2008 (LINK)

SAD2: 10articles(top)

Takeda, Mitsuhiro and Jee, Jungoo and Ono, Akira Mei M. and Terauchi, Tsutomu and Kainosho, Masatsune

Hydrogen Exchange Rate of Tyrosine Hydroxyl Groups in Proteins As Studied by the Deuterium Isotope Effect on C(zeta) Chemical Shifts.

Journal of the American Chemical Society, Dec, 2009 (LINK)

Yoshida, Hitoshi and Furuya, Nobuhisa and Lin, Yi-Jan J. and Güntert, Peter and Komano, Teruya and Kainosho, Masatsune

Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation.

Journal of molecular biology, Dec, 2008 (LINK)

Takeda, Mitsuhiro and Sugimori, Nozomi and Torizawa, Takuya and Terauchi, Tsutomu and Ono, Akira M. and Yagi, Hirokazu and Yamaguchi, Yoshiki and Kato, Koichi and Ikeya, Teppei and Jee, Jungoo and Güntert, Peter and Aceti, David J. and Markley, John L. and Kainosho, Masatsune

Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.

The FEBS journal, Dec, 2008 (LINK)

Ohki, S. and Kainosho, M.

Stable isotope labeling methods for protein NMR spectroscopy

Progress in Nuclear Magnetic Resonance Spectroscopy, Nov, 2008 (LINK)

Nihon Hyomen Kagakkai

Keisan shimyureshon to bunseki deta kaiseki., 2008 (LINK)

Takeda, Mitsuhiro and Ikeya, Teppei and Güntert, Peter and Kainosho, Masatsune

Automated structure determination of proteins with the SAIL-FLYA NMR method.

Nature protocols, Nov, 2007 (LINK)

Takeda, Mitsuhiro and Ono, Akira M. and Terauchi, Tsutomu and Kainosho, Masatsune

Application of SAIL phenylalanine and tyrosine with alternative isotope-labeling patterns for protein structure determination.

Journal of biomolecular NMR, Aug, 2009 (LINK)

Okuma, Kosuke and Ono, Akira M. and Tsuchiya, Seiji and Oba, Makoto and Nishiyama, Kozaburo and Kainosho, Masatsune and Terauchi, Tsutomu

Assymetric synthesis of (2S,3R)- and (2S,3S)-[2-13C;3-2H] glutamic acid

Tetrahedron Letters, Apr, 2009 (LINK)

Terauchi, Tsutomu and Kobayashi, Kuniko and Okuma, Kosuke and Oba, Makoto and Nishiyama, Kozaburo and Kainosho, Masatsune

Stereoselective synthesis of triply isotope-labeled Ser, Cys, and Ala: amino acids for stereoarray isotope labeling technology.

Organic letters, Jul, 2008 (LINK)

Takeda, Mitsuhiro and Chang, Chung-ke K. and Ikeya, Teppei and Güntert, Peter and Chang, Yuan-hsiang H. and Hsu, Yen-lan L. and Huang, Tai-huang H. and Kainosho, Masatsune

Solution structure of the c-terminal dimerization domain of SARS coronavirus nucleocapsid protein solved by the SAIL-NMR method.

Journal of molecular biology, Jul, 2008 (LINK)

Chemical Regulation

CRC1: 66articles(top)

Mizuhara, Tsukasa and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Efficient Synthesis of Pyrimido[1,2-c] [1,3]benzothiazin-6-imines and Related Tricyclic Heterocycles by S(N)Ar-Type C-S, C-N, or C-O Bond Formation with Heterocumulenes.

The Journal of organic chemistry, Dec, 2009 (LINK)

Komatsu, Toru and Urano, Yasuteru and Fujikawa, Yuuta and Kobayashi, Tomonori and Kojima, Hirotatsu and Terai, Takuya and Hanaoka, Kenjiro and Nagano, Tetsuo

Development of 2,6-carboxy-substituted boron dipyrromethene (BODIPY) as a novel scaffold of ratiometric fluorescent probes for live cell imaging.

Chemical communications (Cambridge, England), Dec, 2009 (LINK)

Enomoto, Taro and Girard, Anne-Lise L. and Yasui, Yoshizumi and Takemoto, Yoshiji

Gold(I)-Catalyzed Tandem Reactions Initiated by Hydroamination of Alkynyl Carbamates: Application to the Synthesis of Nitidine.

The Journal of organic chemistry, Nov, 2009 (LINK)

Kajiwara, Kazumi and Watanabe, Kentaro and Tokiwa, Rei and Kurose, Tomoko and Ohno, Hiroaki and Tsutsumi, Hiroko and Hata, Yoji and Izumi, Kazuki and Kodama, Eiichi and Matsuoka, Masao and Oishi, Shinya and Fujii, Nobutaka

Bioorganic synthesis of a recombinant HIV-1 fusion inhibitor, SC35EK, with an N-terminal pyroglutamate capping group.

Bioorganic & medicinal chemistry, Oct, 2009 (LINK)

Shindoh, Naoya and Takemoto, Yoshiji and Takasu, Kiyosei

Auto-Tandem Catalysis: A Single Catalyst Activating Mechanistically Distinct Reactions in a Single Reactor.

Chemistry (Weinheim an der Bergstrasse, Germany), Oct, 2009 (LINK)

Selim, Khalid B. and Matsumoto, Yasumasa and Yamada, Ken-Ichi I. and Tomioka, Kiyoshi

Efficient Chiral N-Heterocyclic Carbene/Copper(I)-Catalyzed Asymmetric Allylic Arylation with Aryl Grignard Reagents.

Angewandte Chemie (International ed. in English), Oct, 2009 (LINK)

Inuki, Shinsuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Total synthesis of (+/-)-lysergic acid, lysergol, and isolysergol by palladium-catalyzed domino cyclization of amino allenes bearing a bromoindolyl group.

Organic letters, Nov, 2008 (LINK)

Selim, Khalid B. and Yamada, Ken-ichi and Tomioka, Kiyoshi

Copper-catalyzed asymmetric allylic substitution with aryl and ethyl Grignard reagents.

Chemical communications (Cambridge, England), Nov, 2008 (LINK)

Shindoh, Naoya and Tokuyama, Hidetoshi and Takemoto, Yoshiji and Takasu, Kiyosei

Auto-tandem catalysis in the synthesis of substituted quinolines from aldimines and electron-rich olefins: cascade Povarov-hydrogen-transfer reaction.

The Journal of organic chemistry, Oct, 2008 (LINK)

Masato, Kitajima and Yohsuke, Minowa and Hideo, Matsuda and Yasushi, Okuno

Compound-Transporter Interaction Studies using Canonical Correlation Analysis

Chem-Bio Informatics Journal, 2008

Tomita, Kenji and Oishi, Shinya and Ohno, Hiroaki and Fujii, Nobutaka

Structure-activity relationship study and NMR analysis of fluorobenzoyl pentapeptide GPR54 agonists.

Biopolymers, 2008 (LINK)

Yasui, Yoshizumi and Takemoto, Yoshiji

Intra- and intermolecular amidation of C-C unsaturated bonds through palladium-catalyzed reactions of carbamoyl derivatives.

Chemical record (New York, N.Y.), 2008 (LINK)

Yamaoka, Yousuke and Miyabe, Hideto and Yasui, Yoshizumi and Takemoto, Yoshiji

Chiral Thiourea Catalyzed Direct Mannich Reaction.

ChemInform, Dec, 2007 (LINK)

Ohno, Hiroaki and Iuchi, Mutsumi and Fujii, Nobutaka and Tanaka, Tetsuaki

Zipper-mode double C-H activation: palladium-catalyzed direct construction of highly-fused heterocyclic systems.

Organic letters, Nov, 2007 (LINK)

Watanabe, Toshiaki and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Gold-catalyzed hydroarylation of allenes: a highly regioselective carbon-carbon bond formation producing six-membered rings.

Organic letters, Nov, 2007 (LINK)

Watanabe, Toshiaki and Ueda, Satoshi and Inuki, Shinsuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

One-pot synthesis of carbazoles by palladium-catalyzed N-arylation and oxidative coupling.

Chemical communications (Cambridge, England), Nov, 2007 (LINK)

Hoshino, Tatsuya and Nakaya, Tadashi and Homan, Takashi and Tanaka, Ken-ichiro and Sugimoto, Yukihiko and Araki, Wataru and Narita, Masami and Narumiya, Shuh and Suzuki, Toshiharu and Mizushima, Tohru

Involvement of prostaglandin E2 in production of amyloid-beta peptides both in vitro and in vivo.

The Journal of biological chemistry, Nov, 2007 (LINK)

Ohno, Hiroaki and Aso, Akimasa and Kadoh, Yoichi and Fujii, Nobutaka and Tanaka, Tetsuaki

Heck-type cyclization of oxime ethers: stereoselective carbon-carbon bond formation with aryl halides to produce heterocyclic oximes.

Angewandte Chemie (International ed. in English), 2007 (LINK)

Oushiki, Daihi and Kojima, Hirotatsu and Terai, Takuya and Arita, Makoto and Hanaoka, Kenjiro and Urano, Yasuteru and Nagano, Tetsuo

Development and Application of a Near-Infrared Fluorescence Probe for Oxidative Stress Based on Differential Reactivity of Linked Cyanine Dyes.

Journal of the American Chemical Society, Feb, 2010 (LINK)

Akindele, Tito and Yamada, Ken-ichi and Sejima, Takumi and Maekawa, Masaru and Yamamoto, Yasutomo and Nakano, Mayu and Tomioka, Kiyoshi

Stereoselective radical addition of an acetal to sterically tuned enantiomerically pure N-sulfinyl imines.

Chemical & pharmaceutical bulletin, Feb, 2010 (LINK)

Narumi, Tetsuo and Hayashi, Ryoko and Tomita, Kenji and Kobayashi, Kazuya and Tanahara, Noriko and Ohno, Hiroaki and Naito, Takeshi and Kodama, Eiichi and Matsuoka, Masao and Oishi, Shinya and Fujii, Nobutaka

Synthesis and biological evaluation of selective CXCR4 antagonists containing alkene dipeptide isosteres

Org. Biomol. Chem., Feb, 2010 (LINK)

Yano, Yoshiaki and Shimai, Norie and Matsuzaki, Katsumi

Design of a Soluble Transmembrane Helix for Measurements of Water-Membrane Partitioning

The Journal of Physical Chemistry B, Feb, 2010 (LINK)

Sato, Tomohiro and Honma, Teruki and Yokoyama, Shigeyuki

Combining Machine Learning and Pharmacophore-Based Interaction Fingerprint for in Silico Screening

Journal of Chemical Information and Modeling, Jan, 2010 (LINK)

Ohta, Yusuke and Chiba, Hiroaki and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Construction of Nitrogen Heterocycles Bearing an Aminomethyl Group by Copper-Catalyzed Domino Three-Component Coupling-Cyclization.

The Journal of organic chemistry, Aug, 2009 (LINK)

Yano, Yoshiaki and Matsuzaki, Katsumi

Tag–probe labeling methods for live-cell imaging of membrane proteins

Biochimica et Biophysica Acta (BBA) - Biomembranes, Jul, 2009 (LINK)

Kiyose, Kazuki and Aizawa, Sakiko and Sasaki, Eita and Kojima, Hirotatsu and Hanaoka, Kenjiro and Terai, Takuya and Urano, Yasuteru and Nagano, Tetsuo

Molecular Design Strategies for Near-Infrared Ratiometric Fluorescent Probes Based on the Unique Spectral Properties of Aminocyanines.

Chemistry (Weinheim an der Bergstrasse, Germany), Jul, 2009 (LINK)

Kikuchi, Kazuya and Hashimoto, Shigeki and Mizukami, Shin and Nagano, Tetsuo

Anion sensor-based ratiometric peptide probe for protein kinase activity.

Organic letters, Jul, 2009 (LINK)

Oishi, Shinya and Kodera, Yasuyo and Nishikawa, Hiroki and Kamitani, Hirotaka and Watabe, Tsuyoshi and Ohno, Hiroaki and Tochikura, Tadafumi and Shimane, Kazuki and Kodama, Eiichi and Matsuoka, Masao and Mizukoshi, Fuminori and Tsujimoto, Hajime and Fujii, Nobutaka

Design and synthesis of membrane fusion inhibitors against the feline immunodeficiency virus.

Bioorganic & medicinal chemistry, Jul, 2009 (LINK)

Shindoh, Naoya and Takemoto, Yoshiji and Takasu, Kiyosei

Atropisomerism of alpha,beta-unsaturated amidines: stereoselective synthesis by catalytic cascade reaction and optical resolution.

Chemistry (Weinheim an der Bergstrasse, Germany), Jul, 2009 (LINK)

Watanabe, Toshiaki and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Palladium-catalyzed direct synthesis of carbazoles via one-pot N-arylation and oxidative biaryl coupling: synthesis and mechanistic study.

The Journal of organic chemistry, Jul, 2009 (LINK)

Ohta, Yusuke and Kubota, Yushi and Watabe, Tsuyoshi and Chiba, Hiroaki and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Rapid Access to 3-(Aminomethyl)isoquinoline-Fused Polycyclic Compounds by Copper-Catalyzed Four-Component Coupling, Cascade Cyclization, and Oxidation.

The Journal of organic chemistry, Jul, 2009 (LINK)

Watabe, Tsuyoshi and Terakawa, Yukihiro and Watanabe, Kentaro and Ohno, Hiroaki and Nakano, Hiroaki and Nakatsu, Toru and Kato, Hiroaki and Izumi, Kazuki and Kodama, Eiichi and Matsuoka, Masao and Kitaura, Kazuo and Oishi, Shinya and Fujii, Nobutaka

X-ray Crystallographic Study of an HIV-1 Fusion Inhibitor with the gp41 S138A Substitution.

Journal of molecular biology, Jul, 2009 (LINK)

Izumi, S. and Urano, Y. and Hanaoka, K. and Terai, T. and Nagano, T.

A simple and effective strategy to increase the sensitivity of fluorescence probes in living cells.

Journal of the American Chemical Society, Jul, 2009 (LINK)

Oishi, S. and Kamitani, H. and Kodera, Y. and Watanabe, K. and Kobayashi, K. and Narumi, T. and Tomita, K. and Ohno, H. and Naito, T. and Kodama, E. and Matsuoka, M. and Fujii, N.

Peptide bond mimicry by (E)-alkene and (Z)-fluoroalkene peptide isosteres: synthesis and bioevaluation of alpha-helical anti-HIV peptide analogues.

Organic & biomolecular chemistry, Jul, 2009 (LINK)

Shindo, M. and Yamamoto, Y. and Yamada, K. and Tomioka, K.

Asymmetric construction of binaphthyl by the chiral diether-mediated conjugate addition of naphthyllithium to naphthalenecarboxylic Acid 2,6-Di-t-butyl-4-methoxyphenyl ester.

Chemical & pharmaceutical bulletin, Jul, 2009 (LINK)

Yasui, Y. and Kinugawa, T. and Takemoto, Y.

Synthetic studies on vincorine: access to the 3a,8a-dialkyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3-b]indole skeleton.

Chemical communications (Cambridge, England), Jul, 2009 (LINK)

Mizuhara, Tsukasa and Inuki, Shinsuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Cu(II)-mediated oxidative intermolecular ortho C-H functionalisation using tetrahydropyrimidine as the directing group.

Chemical communications (Cambridge, England), Jun, 2009 (LINK)

Kobayashi, Kazuya and Narumi, Tetsuo and Oishi, Shinya and Ohno, Hiroaki and Fujii, Nobutaka

Amino Acid-Based Synthesis of Trifluoromethylalkene Dipeptide Isosteres by Alcohol-Assisted Nucleophilic Trifluoromethylation and Organozinc−Copper-Mediated SN2′ Alkylation

The Journal of Organic Chemistry, Jun, 2009 (LINK)

Suzuki, Yamato and Ohta, Yusuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Efficient synthesis of aminomethylated pyrroloindoles and dipyrrolopyridines via controlled copper-catalyzed domino multicomponent coupling and bis-cyclization.

The Journal of organic chemistry, Jun, 2009 (LINK)

Inokuma, Tsubasa and Takasu, Kiyosei and Sakaeda, Toshiyuki and Takemoto, Yoshiji

Hydroxyl group-directed organocatalytic asymmetric Michael addition of alpha,beta-unsaturated ketones with alkenylboronic acids.

Organic letters, Jun, 2009 (LINK)

Koide, Yuichiro and Urano, Yasuteru and Yatsushige, Akira and Hanaoka, Kenjiro and Terai, Takuya and Nagano, Tetsuo

Design and Development of Enzymatically Activatable Photosensitizer Based on Unique Characteristics of Thiazole Orange

Journal of the American Chemical Society, May, 2009 (LINK)

Yamamoto, Yasutomo and Yasuda, Yorinobu and Nasu, Hiroyuki and Tomioka, Kiyoshi

Asymmetric construction of three contiguous stereogenic centers by conjugate addition-alkylation of lithium ester enolate.

Organic letters, May, 2009 (LINK)

Ohta, Yusuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Facile synthesis of 1,2,3,4-tetrahydro-beta-carbolines by one-pot domino three-component indole formation and nucleophilic cyclization.

Organic letters, May, 2009 (LINK)

Kawai, Kayoko and Saito, Akiko and Sudo, Tatsuhiko and Osada, Hiroyuki

A p38 mitogen-activated protein kinase inhibitor screening method using growth recovery of Escherichia coli as an index.

Analytical biochemistry, May, 2009 (LINK)

Sugawara, Taishi and Ito, Keisuke and Shiroishi, Mitsunori and Tokuda, Natsuko and Asada, Hidetsugu and Yurugi-Kobayashi, Takami and Shimamura, Tatsuro and Misaka, Takumi and Nomura, Norimichi and Murata, Takeshi and Abe, Keiko and Iwata, So and Kobayashi, Takuya

Fluorescence-based optimization of human bitter taste receptor expression in Saccharomyces cerevisiae.

Biochemical and biophysical research communications, May, 2009 (LINK)

Yamada, Ken-Ichi and Yamashita, Mitsuaki and Sumiyoshi, Takaaki and Nishimura, Katsumi and Tomioka, Kiyoshi

Total synthesis of (-)-lycorine and (-)-2-epi-lycorine by asymmetric conjugate addition cascade.

Organic letters, Apr, 2009 (LINK)

Miyazaki, Isao and Okumura, Hideo and Simizu, Siro and Takahashi, Yoshikazu and Kanoh, Naoki and Muraoka, Yasuhiko and Nonomura, Yoshiaki and Osada, Hiroyuki

Structure-affinity relationship study of bleomycins and Shble protein by use of a chemical array.

Chembiochem : a European journal of chemical biology, Mar, 2009 (LINK)

Kato, Naoki and Suzuki, Hirokazu and Takagi, Hiroshi and Asami, Yukihiro and Kakeya, Hideaki and Uramoto, Masakazu and Usui, Takeo and Takahashi, Shunji and Sugimoto, Yoshikazu and Osada, Hiroyuki

Identification of cytochrome P450s required for fumitremorgin biosynthesis in Aspergillus fumigatus.

Chembiochem : a European journal of chemical biology, Mar, 2009 (LINK)

Miyazaki, Isao and Simizu, Siro and Ishida, Keisuke and Osada, Hiroyuki

On-chip fragment-based approach for discovery of high-affinity bivalent inhibitors.

Chembiochem : a European journal of chemical biology, Mar, 2009 (LINK)

Tomita, Kenji and Popiel, H. Akiko and Nagai, Yoshitaka and Toda, Tatsushi and Yoshimitsu, Yuji and Ohno, Hiroaki and Oishi, Shinya and Fujii, Nobutaka

Structure-activity relationship study on polyglutamine binding peptide QBP1.

Bioorganic & medicinal chemistry, Feb, 2009 (LINK)

Suzuki, Mayuko and Kawamoto, Yoshito and Sakai, Takeo and Yamamoto, Yasutomo and Tomioka, Kiyoshi

Asymmetric construction of quaternary carbon centers by sequential conjugate addition of lithium amide and in situ alkylation: utility in the synthesis of (-)-aspidospermidine.

Organic letters, Feb, 2009 (LINK)

Akindele, Tito and Yamada, Ken-ichi and Tomioka, Kiyoshi

Dimethylzinc-initiated radical reactions.

Accounts of chemical research, Feb, 2009 (LINK)

Miyabe, Hideto and Yoshida, Kazumasa and Reddy, Valluru Krishna K. and Takemoto, Yoshiji

Palladium- or iridium-catalyzed allylic substitution of guanidines: convenient and direct modification of guanidines.

The Journal of organic chemistry, Jan, 2009 (LINK)

Sakai, Takeo and Yamada, Ken-Ichi and Tomioka, Kiyoshi

Base-induced sequential cyclization-rearrangement of enantioenriched 3-aminoalkanoates to five- and seven-membered lactams.

Chemistry, an Asian journal, Sep, 2008 (LINK)

Yasui, Yoshizumi and Kamisaki, Haruhi and Takemoto, Yoshiji

Enantioselective synthesis of 3,3-disubstituted oxindoles through Pd-catalyzed cyanoamidation.

Organic letters, Aug, 2008 (LINK)

Kawaguchi, Mitsuyasu and Terai, Takuya and Utata, Rei and Kato, Miki and Tsuganezawa, Keiko and Tanaka, Akiko and Kojima, Hirotatsu and Okabe, Takayoshi and Nagano, Tetsuo

Development of a novel fluorescent probe for fluorescence correlation spectroscopic detection of kinase inhibitors.

Bioorganic & medicinal chemistry letters, Jul, 2008 (LINK)

Yano, Yoshiaki and Yano, Akiko and Oishi, Shinya and Sugimoto, Yukihiko and Tsujimoto, Gozoh and Fujii, Nobutaka and Matsuzaki, Katsumi

Coiled-coil tag--probe system for quick labeling of membrane receptors in living cell.

ACS chemical biology, Jun, 2008 (LINK)

Matsumoto, Yasumasa and Yamada, Ken-ichi and Tomioka, Kiyoshi

C(2) symmetric chiral NHC ligand for asymmetric quaternary carbon constructing copper-catalyzed conjugate addition of grignard reagents to 3-substituted cyclohexenones.

The Journal of organic chemistry, Jun, 2008 (LINK)

Mori, Masumi and Ogawa, Naoko and Tanikawa, Kunihiro and Dodo, Sanae and Shibayama, Sotaro and Yokoyama, Shigeyuki and Tanaka, Akiko

Contribution of structural biology to clinically validated target proteins.

Drug discovery today, Jun, 2008 (LINK)

長野哲雄

大学における創薬研究に必要な基盤は何か ―大学でなぜ薬がつくれないのか―

現代化学, May, 2008

Oishi, Shinya and Masuda, Ryo and Evans, Barry and Ueda, Satoshi and Goto, Yukiko and Ohno, Hiroaki and Hirasawa, Akira and Tsujimoto, Gozoh and Wang, Zixuan and Peiper, Stephen C. and Naito, Takeshi and Kodama, Eiichi and Matsuoka, Masao and Fujii, Nobutaka

Synthesis and application of fluorescein- and biotin-labeled molecular probes for the chemokine receptor CXCR4.

Chembiochem : a European journal of chemical biology, May, 2008 (LINK)

Watanabe, Toshiaki and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Palladium-catalyzed sp(3) CH activation of simple alkyl groups: direct preparation of indoline derivatives from N-alkyl-2-bromoanilines.

Organic letters, May, 2008 (LINK)

Ohno, Hiroaki and Okano, Akinori and Kosaka, Shohei and Tsukamoto, Koji and Ohata, Miyo and Ishihara, Kotaro and Maeda, Hatsuo and Tanaka, Tetsuaki and Fujii, Nobutaka

Direct construction of bicyclic heterocycles by palladium-catalyzed domino cyclization of propargyl bromides.

Organic letters, Mar, 2008 (LINK)

Ohta, Yusuke and Oishi, Shinya and Fujii, Nobutaka and Ohno, Hiroaki

Facile synthesis of 3-(aminomethyl)isoquinolines by copper-catalysed domino four-component coupling and cyclisation.

Chemical communications (Cambridge, England), Feb, 2008 (LINK)

Okuno, Yasushi and Tamon, Akiko and Yabuuchi, Hiroaki and Niijima, Satoshi and Minowa, Yohsuke and Tonomura, Koichiro and Kunimoto, Ryo and Feng, Chunlai

GLIDA: GPCR--ligand database for chemical genomics drug discovery--database and tools update.

Nucleic acids research, Jan, 2008 (LINK)

Ogata, Tokutaro and Ujihara, Atsushi and Tsuchida, Susumu and Shimizu, Tomoko and Kaneshige, Atsunori and Tomioka, Kiyoshi

Catalytic asymmetric intramolecular hydroamination of aminoalkenes

Tetrahedron Letters, Sep, 2007 (LINK)

Information Platform

IPC1: 14articles(top)

Yura, Kei and Sulaiman, Sintawee and Hatta, Yosuke and Shionyu, Masafumi and Go, Mitiko

RESOPS: A Database for Analyzing the Correspondence of RNA Editing Sites to Protein Three-Dimensional Structures.

Plant & cell physiology, Oct, 2009 (LINK)

Yamazaki, Yukiko and Akashi, Ryo and Banno, Yutaka and Endo, Takashi and Ezura, Hiroshi and Fukami-Kobayashi, Kaoru and Inaba, Kazuo and Isa, Tadashi and Kamei, Katsuhiko and Kasai, Fumie and Kobayashi, Masatomo and Kurata, Nori and Kusaba, Makoto and Matuzawa, Tetsuro and Mitani, Shohei and Nakamura, Taro and Nakamura, Yukio and Nakatsuji, Norio and Naruse, Kiyoshi and Niki, Hironori and Nitasaka, Eiji and Obata, Yuichi and Okamoto, Hitoshi and Okuma, Moriya and Sato, Kazuhiro and Serikawa, Tadao and Shiroishi, Toshihiko and Sugawara, Hideaki and Urushibara, Hideko and Yamamoto, Masatoshi and Yaoita, Yoshio and Yoshiki, Atsushi and Kohara, Yuji

NBRP databases: databases of biological resources in Japan

Nucl. Acids Res., Jan, 2010 (LINK)

Fukunishi, Yoshifumi and Mitomo, Daisuke and Nakamura, Haruki

Protein-Ligand Binding Free Energy Calculation by the Smooth Reaction Path Generation (SRPG) Method.

Journal of chemical information and modeling, Aug, 2009 (LINK)

Kwon, Yeondae and Shigemoto, Yasumasa and Kuwana, Yoshikazu and Sugawara, Hideaki

Web API for biology with a workflow navigation system.

Nucleic acids research, Jul, 2009 (LINK)

Apostolov, Rossen and Yonezawa, Yasushige and Standley, Daron M. and Kikugawa, Gota and Takano, Yu and Nakamura, Haruki

Membrane attachment facilitates ligand access to the active site in monoamine oxidase A.

Biochemistry, Jun, 2009 (LINK)

Fukuchi, Satoshi and Homma, Keiichi and Minezaki, Yoshiaki and Gojobori, Takashi and Nishikawa, Ken

Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors

BMC Structural Biology, Apr, 2009 (LINK)

Yamazaki, Yukiko and Sugawara, Hideaki

National BioResource Project Information Center.

Experimental animals / Japanese Association for Laboratory Animal Science, Apr, 2009 (LINK)

Fukunishi, Yoshifumi and Mashimo, Tadaaki and Orita, Masaya and Ohno, Kazuki and Nakamura, Haruki

In silico fragment screening by replica generation (FSRG) method for fragment-based drug design.

Journal of chemical information and modeling, Apr, 2009 (LINK)

Yonezawa, Yasushige and Nakata, Kazuto and Sakakura, Kota and Takada, Toshikazu and Nakamura, Haruki

Intra- and intermolecular interaction inducing pyramidalization on both sides of a proline dipeptide during isomerization: an ab initio QM/MM molecular dynamics simulation study in explicit water.

Journal of the American Chemical Society, Apr, 2009 (LINK)

Tada, Masahito and Nagasima, Takehiro and Udagawa, Taro and Tachikawa, Masanori and Sugawara, Hideaki

Ab initio fragment molecular orbital (FMO) analysis of the structure of the phosphoinositide-binding peptide from gelsolin

Journal of Molecular Structure: THEOCHEM, Mar, 2009 (LINK)

Kinjo, Akira R. and Nakamura, Haruki

Comprehensive structural classification of ligand-binding motifs in proteins.

Structure (London, England : 1993), Feb, 2009 (LINK)

Fukuchi, Satoshi and Homma, Keiichi and Sakamoto, Shigetaka and Sugawara, Hideaki and Tateno, Yoshio and Gojobori, Takashi and Nishikawa, Ken

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

Nucleic acids research, Jan, 2009 (LINK)

Standley, Daron M. and Toh, Hiroyuki and Nakamura, Haruki

Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.

Proteins, Sep, 2008 (LINK)

Standley, Daron M. and Kinjo, Akira R. and Kinoshita, Kengo and Nakamura, Haruki

Protein structure databases with new web services for structural biology and biomedical research.

Briefings in bioinformatics, Jul, 2008 (LINK)

IPD1: 5articles(top)

Yura, Kei and Hayward, Steven

The interwinding nature of protein-protein interfaces and its implication for protein complex formation

Bioinformatics, Dec, 2009 (LINK)

Nemoto, Wataru and Fukui, Kazuhiko and Toh, Hiroyuki

GRIP: A server for predicting interfaces for GPCR oligomerization.

Journal of receptor and signal transduction research, Nov, 2009 (LINK)

Shimizu, Kana and Toh, Hiroyuki

Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network

Journal of Molecular Biology, Oct, 2009 (LINK)

Matsumoto, Atsushi and Kamata, Tetsuji and Takagi, Junichi and Iwasaki, Kenji and Yura, Kei

Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis.

Biophysical journal, Sep, 2008 (LINK)

Yura, Kei and Go, Mitiko

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles.

BMC plant biology, Jul, 2008 (LINK)

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